Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   IPU21_RS00205 Genome accession   NZ_CP063368
Coordinates   44709..46337 (-) Length   542 a.a.
NCBI ID   WP_212574913.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 245-1     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39709..51337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPU21_RS00180 (IPU21_00180) - 40202..40417 (-) 216 WP_212574910.1 hypothetical protein -
  IPU21_RS00185 (IPU21_00185) - 40436..40945 (-) 510 WP_212574911.1 DUF1643 domain-containing protein -
  IPU21_RS00190 (IPU21_00190) - 40958..41269 (-) 312 WP_107364416.1 DUF960 family protein -
  IPU21_RS00195 (IPU21_00195) - 41365..41703 (-) 339 WP_107376271.1 SAUGI family uracil-DNA glycosylase inhibitor -
  IPU21_RS00200 (IPU21_00200) - 42364..44655 (+) 2292 WP_212574912.1 CDP-glycerol glycerophosphotransferase family protein -
  IPU21_RS00205 (IPU21_00205) ccrB 44709..46337 (-) 1629 WP_212574913.1 cassette chromosome recombinase CcrB Machinery gene
  IPU21_RS00210 (IPU21_00210) ccrA 46357..47706 (-) 1350 WP_212574914.1 cassette chromosome recombinase CcrA Machinery gene
  IPU21_RS00215 (IPU21_00215) - 47883..48140 (-) 258 WP_070817192.1 hypothetical protein -
  IPU21_RS00220 (IPU21_00220) cch1 48208..49998 (-) 1791 WP_212574915.1 cassette chromosome replicative helicase -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62608.66 Da        Isoelectric Point: 9.8699

>NTDB_id=494791 IPU21_RS00205 WP_212574913.1 44709..46337(-) (ccrB) [Staphylococcus delphini strain 245-1]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCQFHHFEVTDIYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYEKIPDSKHELMINQHEANIVKYIFEAYAKGHGYRKIANALNHKGYVTKKGKPFSVSSITYILSNPFYIGQIQFAK
YKDWNEKRRKGLNDKPVIAQGKHSPIISQDLWDKVQMRKKQIKEKPQVHGKGTNLLTGIIRCPQCGAAMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRAEVIEKYVMDQILEIVKSDKVIKKVVERVNQENQVDVTALNHDIAYKQQQFD
EVQTKLHNLAQTINDNPDLVSALNPAIHQYETQLNDITKQINLLKRQQNHDKPTYDTKQIATLLKQIFQNIETLDKSQLK
ALYLSVIDRIDIRKDPNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLSLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=494791 IPU21_RS00205 WP_212574913.1 44709..46337(-) (ccrB) [Staphylococcus delphini strain 245-1]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATGCAAAGTACAGAAGGTTATAGTAT
TGATGGCCAAATCAATCAGATTAGAGAATACTGTCAATTTCATCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAATCTATGAACCGCCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTATAAAACAAACCGACTTGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAGCAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACGAGTAGCGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTTGAACGTAATAATATTGTCGAGAACGTTTTCATGGGCCAAACCCGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTGCCGTTAGGTTATGAAAAAATACCCGATAGTAAACATGAACTGATGATTAATCAACATGAAGCCAATATTGTGAAATA
TATATTTGAAGCTTACGCTAAAGGTCATGGTTACCGTAAAATTGCTAATGCGTTGAATCATAAAGGTTATGTCACTAAAA
AAGGCAAACCCTTTAGTGTGAGTTCTATAACCTATATCCTGTCTAACCCCTTCTACATTGGACAAATTCAGTTTGCGAAA
TACAAAGACTGGAATGAAAAGCGTCGTAAGGGGCTAAACGATAAACCTGTCATCGCTCAGGGAAAGCATTCTCCTATTAT
AAGCCAAGATTTGTGGGACAAAGTCCAAATGCGTAAGAAACAAATCAAAGAAAAGCCGCAAGTACATGGTAAAGGGACTA
ACCTACTCACGGGTATTATACGTTGTCCCCAGTGTGGCGCAGCCATGGCCGCTAGCAATACAACGAATACACTCAAAGAT
GGCACTAAGAAACGTATCCGTTACTATTCCTGTAGCAACTTTCGAAATAAAGGGTCTAAAGTGTGCTCAGCGAATAGTGT
CAGAGCTGAAGTCATTGAAAAATATGTCATGGATCAAATACTGGAAATTGTCAAAAGTGATAAAGTCATCAAAAAGGTTG
TCGAACGTGTTAATCAGGAGAATCAAGTGGATGTCACTGCACTTAACCATGACATTGCTTATAAACAACAACAATTTGAT
GAAGTACAAACTAAACTTCACAATCTCGCTCAAACCATCAATGACAACCCAGATTTAGTCTCAGCGCTCAATCCTGCCAT
TCATCAATATGAAACCCAACTCAATGATATTACAAAACAAATTAACTTACTCAAACGCCAACAAAATCATGATAAACCCA
CCTATGATACTAAACAAATCGCTACTCTATTAAAACAAATATTTCAAAATATAGAGACCTTGGATAAATCACAGCTTAAA
GCATTATACCTTTCGGTGATTGATCGTATTGATATTCGTAAGGACCCTAATCACAAGAAGCAATTCTACGTCACACTCAA
GCTCAATAATGAAATAATAAAACAACTTTTTAATAATAAACAACTCGACGAAGTGCACCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACTCTTTCCCTTCAAATCTGA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-279)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

87.454

100

0.875