Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IPU22_RS08130 Genome accession   NZ_CP063367
Coordinates   1731040..1731909 (-) Length   289 a.a.
NCBI ID   WP_212574521.1    Uniprot ID   A0AAQ0D5H4
Organism   Staphylococcus delphini strain 2794-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1726040..1736909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPU22_RS08115 (IPU22_08110) xerC 1726527..1727387 (-) 861 WP_420907863.1 tyrosine recombinase XerC -
  IPU22_RS08120 (IPU22_08115) trmFO 1727537..1728841 (-) 1305 WP_096540762.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IPU22_RS08125 (IPU22_08120) topA 1728869..1730938 (-) 2070 WP_096540759.1 type I DNA topoisomerase -
  IPU22_RS08130 (IPU22_08125) dprA 1731040..1731909 (-) 870 WP_212574521.1 DNA-processing protein DprA Machinery gene
  IPU22_RS08135 (IPU22_08130) sucD 1732152..1733057 (-) 906 WP_212574522.1 succinate--CoA ligase subunit alpha -
  IPU22_RS08140 (IPU22_08135) sucC 1733079..1734245 (-) 1167 WP_019167871.1 ADP-forming succinate--CoA ligase subunit beta -
  IPU22_RS08145 (IPU22_08140) - 1735415..1735690 (-) 276 WP_212574523.1 hypothetical protein -
  IPU22_RS08150 (IPU22_08145) - 1735782..1736567 (-) 786 WP_096540751.1 ribonuclease HII -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32796.97 Da        Isoelectric Point: 8.3245

>NTDB_id=494778 IPU22_RS08130 WP_212574521.1 1731040..1731909(-) (dprA) [Staphylococcus delphini strain 2794-1]
MKQFLLLLLYAGFSTQQLQSYYPKLCTFTGNLPQRIQAFKSMLSHMTSTHIQQKLARLDTLNIHTIEPALHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSANSLGIVGARQHTPYTSQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHHLSTIGVLGFGHFHHYPKNTQALRQTMEQHHLTISEYPPHTPIAKFRFPERNRIISGLSTGMLITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYAN

Nucleotide


Download         Length: 870 bp        

>NTDB_id=494778 IPU22_RS08130 WP_212574521.1 1731040..1731909(-) (dprA) [Staphylococcus delphini strain 2794-1]
ATGAAACAATTTCTACTATTATTATTGTACGCTGGATTTTCAACACAACAACTCCAATCCTACTATCCTAAACTTTGTAC
TTTTACAGGAAACTTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCACACATGACGTCAACGCATATTCAACAAA
AGCTCGCACGACTCGATACGCTTAATATTCATACAATTGAACCGGCGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCGCCGTTGTTGAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTCGAACT
GCTTCAACATTCTGCAAATAGTCTTGGCATTGTAGGTGCAAGGCAACATACACCATACACCTCGCAAGCGCTCGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACTATTATTTCAGGACTGGCACATGGCACAGACGCACTCGCACATCATTAC
GCGATTCGACATCACTTGTCCACGATTGGTGTACTCGGCTTTGGGCATTTTCATCATTATCCTAAAAATACACAAGCATT
ACGCCAGACGATGGAACAACATCATTTGACCATAAGCGAATATCCACCTCACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAACCGCATTATTAGTGGTTTGTCGACAGGAATGCTCATCACTGAGGCGAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCAGGGGATATGTTTAATGTGCATACGAAAGGCAATAT
GCTACGTGTCAAAGAGGGCGCAGAAATTGTATTATGTGCCCAAGATATTTTGAAAGATTATGCGAATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

100

0.509
  dprA Staphylococcus aureus N315

50.345

100

0.505