Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   INH39_RS06530 Genome accession   NZ_CP063361
Coordinates   1455936..1457363 (-) Length   475 a.a.
NCBI ID   WP_243492497.1    Uniprot ID   -
Organism   Massilia violaceinigra strain sipir     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1450936..1462363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INH39_RS06520 (INH39_06485) - 1451106..1452230 (-) 1125 WP_167073869.1 ribonucleotide-diphosphate reductase subunit beta -
  INH39_RS06525 (INH39_06490) - 1452312..1455269 (-) 2958 WP_243492496.1 ribonucleoside-diphosphate reductase subunit alpha -
  INH39_RS06530 (INH39_06495) pilR 1455936..1457363 (-) 1428 WP_243492497.1 sigma-54 dependent transcriptional regulator Regulator
  INH39_RS06535 (INH39_06500) - 1457360..1459096 (-) 1737 WP_243492498.1 PAS domain-containing sensor histidine kinase -
  INH39_RS06540 (INH39_06505) - 1459100..1459363 (-) 264 WP_243492499.1 PP0621 family protein -
  INH39_RS06545 (INH39_06510) - 1459360..1460163 (-) 804 WP_243492500.1 inner membrane protein YpjD -
  INH39_RS06550 (INH39_06515) - 1460231..1460551 (-) 321 Protein_1292 ABC transporter ATP-binding protein -
  INH39_RS06555 (INH39_06520) - 1460748..1460975 (-) 228 Protein_1293 ABC transporter substrate-binding protein -
  INH39_RS06560 (INH39_06525) - 1461017..1461343 (+) 327 WP_243492501.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 50493.90 Da        Isoelectric Point: 4.7777

>NTDB_id=494727 INH39_RS06530 WP_243492497.1 1455936..1457363(-) (pilR) [Massilia violaceinigra strain sipir]
MTSPRVLVVDDEADLRELLEITLVRMGLDVDSAETLREARAFLAQNDYGLILTDMRLPDGLGLELVQEVGASSKSTPIAV
VTAYGSAENAVVALKAGAFDYVSKPVVLEDLRVMVQSALRLSAPAAPGASAAGAGGGSGSRLIGESAVMQSLRGQIERLA
RSMAPIAITGESGSGKELVAREIHARSSRAGKPFIAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFHAANGGTLML
DEVADLPLAMQVKLLRAIQERRVRKIGATAEEPVDVRIISATHQNLAQCVETGKFRQDLFYRLNVIELSVPPLRERLDDL
GVLVNGMLARLAGAGQPAALGPQVLETLRTYSFPGNVRELENVLERALAFANDGVIEVGDLSLKGARVAGTAPAEVAAAV
VAPEPVAAPLPVSAGAPAQLPSSLPDYLEQVEREIILRALTQTQFNRTQAAVLLGISFRQLRYQMQKLDIQEPEG

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=494727 INH39_RS06530 WP_243492497.1 1455936..1457363(-) (pilR) [Massilia violaceinigra strain sipir]
ATGACATCACCCCGCGTACTGGTCGTCGATGACGAGGCGGATTTACGCGAACTACTGGAAATCACGCTGGTCAGGATGGG
GCTCGATGTGGACAGCGCCGAAACGCTGCGCGAGGCGCGCGCCTTCCTGGCGCAGAACGATTACGGCCTCATTCTCACCG
ACATGCGCCTGCCCGACGGGCTGGGCCTGGAACTGGTGCAGGAAGTGGGCGCCTCCAGCAAGTCGACCCCGATCGCGGTC
GTGACCGCCTACGGCAGCGCCGAAAACGCGGTGGTGGCGCTCAAGGCGGGCGCCTTCGATTACGTCTCCAAGCCGGTGGT
GCTGGAAGATTTGCGGGTGATGGTGCAGTCGGCCTTGCGCCTGTCGGCGCCGGCCGCGCCGGGCGCCAGTGCGGCCGGGG
CGGGGGGCGGCAGCGGCTCGCGCCTGATTGGCGAATCGGCCGTGATGCAGTCGCTGCGCGGCCAGATCGAGCGGCTGGCG
CGCTCGATGGCGCCGATCGCCATTACCGGCGAGTCGGGCAGCGGCAAGGAACTGGTGGCGCGCGAAATCCACGCCCGCAG
TTCGCGCGCGGGCAAGCCTTTTATTGCCGTGAACTGCGGCGCGATTCCCGAAGCGCTGATGGAAGCGGAGTTTTTCGGCT
ACCGCAAGGGGGCGTTTACGGGCGCCGCCGACGAGCGCGACGGGTTTTTCCATGCGGCCAACGGCGGCACCCTGATGCTC
GACGAAGTGGCCGACCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGG
GGCGACTGCCGAGGAGCCGGTCGACGTGCGCATCATCAGCGCCACGCACCAGAACCTGGCCCAGTGCGTCGAAACCGGCA
AGTTCCGGCAAGATCTGTTTTACCGTTTGAATGTGATCGAACTGAGCGTGCCGCCGCTGCGCGAGCGGCTCGACGACCTG
GGCGTGCTGGTAAACGGCATGCTGGCGCGCCTGGCCGGAGCGGGCCAGCCGGCCGCGCTGGGGCCGCAGGTGCTGGAGAC
CTTGCGCACGTATTCGTTTCCGGGCAATGTGCGCGAGCTGGAAAACGTGCTGGAACGGGCGCTGGCGTTTGCCAATGACG
GCGTGATCGAGGTGGGCGACCTGTCGCTCAAGGGCGCGCGGGTGGCCGGGACGGCGCCGGCCGAGGTGGCGGCGGCTGTG
GTGGCGCCGGAACCGGTGGCGGCGCCATTGCCGGTCAGCGCCGGCGCGCCGGCGCAGCTGCCCAGCAGCCTGCCCGACTA
CCTGGAACAGGTCGAACGCGAGATCATCCTGCGCGCGCTGACCCAGACCCAGTTTAACCGCACCCAGGCGGCCGTGCTGC
TGGGGATCAGCTTCCGCCAGCTGCGCTACCAGATGCAGAAGCTCGATATTCAGGAGCCGGAAGGGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-308)

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

53.39

99.368

0.531
  pilR Acinetobacter baumannii strain A118

45.957

98.947

0.455