Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   INQ56_RS16585 Genome accession   NZ_CP063360
Coordinates   3209547..3210236 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain BIM B-263     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3204547..3215236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS16550 (INQ56_16550) - 3204633..3205115 (-) 483 WP_007499977.1 flagellar protein FlgN -
  INQ56_RS16555 (INQ56_16555) flgM 3205134..3205397 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  INQ56_RS16560 (INQ56_16560) - 3205477..3205896 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  INQ56_RS16565 (INQ56_16565) - 3205953..3206675 (-) 723 WP_373870389.1 ComF family protein -
  INQ56_RS16570 (INQ56_16570) - 3206636..3206929 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  INQ56_RS16575 (INQ56_16575) comFA 3206994..3208373 (-) 1380 WP_155720713.1 DEAD/DEAH box helicase Machinery gene
  INQ56_RS16580 (INQ56_16580) - 3208493..3209335 (-) 843 WP_024719242.1 DegV family protein -
  INQ56_RS16585 (INQ56_16585) degU 3209547..3210236 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  INQ56_RS16590 (INQ56_16590) degS 3210301..3211476 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  INQ56_RS16595 (INQ56_16595) - 3211698..3212366 (+) 669 WP_017357860.1 YigZ family protein -
  INQ56_RS16600 (INQ56_16600) - 3212351..3213448 (+) 1098 WP_007499958.1 LCP family protein -
  INQ56_RS16605 (INQ56_16605) - 3213487..3214554 (-) 1068 WP_024719245.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=494717 INQ56_RS16585 WP_008348273.1 3209547..3210236(-) (degU) [Bacillus altitudinis strain BIM B-263]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=494717 INQ56_RS16585 WP_008348273.1 3209547..3210236(-) (degU) [Bacillus altitudinis strain BIM B-263]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATTTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996