Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   INQ56_RS07950 Genome accession   NZ_CP063360
Coordinates   1561662..1562564 (+) Length   300 a.a.
NCBI ID   WP_035700738.1    Uniprot ID   A0A1K1TX41
Organism   Bacillus altitudinis strain BIM B-263     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1556662..1567564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS07930 (INQ56_07930) - 1557331..1559064 (+) 1734 WP_159159619.1 glycosyltransferase -
  INQ56_RS07935 (INQ56_07935) - 1559061..1559336 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  INQ56_RS07940 (INQ56_07940) sucC 1559513..1560673 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  INQ56_RS07945 (INQ56_07945) sucD 1560696..1561598 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  INQ56_RS07950 (INQ56_07950) dprA 1561662..1562564 (+) 903 WP_035700738.1 DNA-processing protein DprA Machinery gene
  INQ56_RS07955 (INQ56_07955) topA 1562759..1564834 (+) 2076 WP_008344821.1 type I DNA topoisomerase -
  INQ56_RS07960 (INQ56_07960) trmFO 1564905..1566209 (+) 1305 WP_159159620.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  INQ56_RS07965 (INQ56_07965) xerC 1566272..1567189 (+) 918 WP_039166693.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34045.38 Da        Isoelectric Point: 8.2776

>NTDB_id=494690 INQ56_RS07950 WP_035700738.1 1561662..1562564(+) (dprA) [Bacillus altitudinis strain BIM B-263]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
VPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=494690 INQ56_RS07950 WP_035700738.1 1561662..1562564(+) (dprA) [Bacillus altitudinis strain BIM B-263]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
GTTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1K1TX41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38