Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   IOO21_RS02850 Genome accession   NZ_CP063357
Coordinates   539252..539902 (-) Length   216 a.a.
NCBI ID   WP_002857159.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R4B202     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 534252..544902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO21_RS02815 - 534630..535634 (+) 1005 WP_024088100.1 hypothetical protein -
  IOO21_RS02820 tlyA 535631..536392 (+) 762 WP_002868894.1 TlyA family RNA methyltransferase -
  IOO21_RS02825 ribF 536358..537212 (+) 855 WP_011812722.1 bifunctional riboflavin kinase/FAD synthetase -
  IOO21_RS02830 cmoA 537199..537909 (+) 711 WP_079254181.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  IOO21_RS02835 - 537899..538120 (-) 222 WP_079005306.1 EexN family lipoprotein -
  IOO21_RS02840 - 538111..538551 (-) 441 WP_002868898.1 EexN family lipoprotein -
  IOO21_RS02845 - 538609..539241 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  IOO21_RS02850 CJE0566 539252..539902 (-) 651 WP_002857159.1 DNA/RNA non-specific endonuclease Regulator
  IOO21_RS02855 nth 539899..540525 (-) 627 WP_002857170.1 endonuclease III -
  IOO21_RS02860 peb4 540606..541427 (+) 822 WP_002856774.1 peptidylprolyl isomerase PEB4 -
  IOO21_RS02865 fbaA 541427..542491 (+) 1065 WP_002856965.1 class II fructose-bisphosphate aldolase -
  IOO21_RS02870 - 542586..544028 (+) 1443 WP_002857090.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25504.28 Da        Isoelectric Point: 9.8188

>NTDB_id=494610 IOO21_RS02850 WP_002857159.1 539252..539902(-) (CJE0566) [Campylobacter jejuni strain R4B202]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSSYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNNENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=494610 IOO21_RS02850 WP_002857159.1 539252..539902(-) (CJE0566) [Campylobacter jejuni strain R4B202]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTAGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAGGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATAATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634