Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SALIVA_RS02925 Genome accession   NC_017595
Coordinates   598140..599366 (+) Length   408 a.a.
NCBI ID   WP_014634108.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 593140..604366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS02900 (SALIVA_0586) - 593563..594834 (-) 1272 WP_013990948.1 hydroxymethylglutaryl-CoA reductase, degradative -
  SALIVA_RS02905 (SALIVA_0587) - 594836..596005 (-) 1170 WP_014634105.1 hydroxymethylglutaryl-CoA synthase -
  SALIVA_RS02910 (SALIVA_0588) - 596476..597336 (+) 861 WP_014634106.1 thymidylate synthase -
  SALIVA_RS02915 (SALIVA_0589) - 597444..597947 (+) 504 WP_014634107.1 dihydrofolate reductase -
  SALIVA_RS10600 (SALIVA_0590) - 597952..598122 (+) 171 WP_002886174.1 hypothetical protein -
  SALIVA_RS02925 (SALIVA_0591) clpX 598140..599366 (+) 1227 WP_014634108.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SALIVA_RS02930 (SALIVA_0592) yihA 599376..599975 (+) 600 WP_002885996.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SALIVA_RS02935 (SALIVA_0594) - 600150..601481 (+) 1332 WP_014634109.1 amino acid permease -
  SALIVA_RS02940 (SALIVA_0595) mmuM 601493..602443 (+) 951 WP_014634110.1 homocysteine S-methyltransferase -
  SALIVA_RS02945 (SALIVA_0596) - 602556..602810 (+) 255 WP_002886199.1 DUF1912 family protein -
  SALIVA_RS02950 (SALIVA_0597) - 602885..603262 (+) 378 WP_002885939.1 helix-hairpin-helix domain-containing protein -
  SALIVA_RS02955 (SALIVA_0598) plsY 603380..604021 (-) 642 WP_013990943.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45005.39 Da        Isoelectric Point: 4.3489

>NTDB_id=49459 SALIVA_RS02925 WP_014634108.1 598140..599366(+) (clpX) [Streptococcus salivarius JIM8777]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGVFICNECVALSQEIIREEMAEEVLADLAETPKPKELLDILNNYVVGQDRA
KRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSQEDVTKVRITKEAVDGT
AAPVLEIA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=49459 SALIVA_RS02925 WP_014634108.1 598140..599366(+) (clpX) [Streptococcus salivarius JIM8777]
ATGGCTGGAAATCGTAATGAAGAAATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAAGAAGTAAAGAAAATTATCGC
TGGGAATGGCGTCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAATGGCAGAAGAAGTTT
TGGCTGACTTGGCTGAAACTCCAAAGCCAAAAGAACTTTTGGATATTTTGAACAACTATGTCGTGGGACAAGACCGTGCG
AAACGTGCCTTGGCGGTAGCTGTTTACAACCACTATAAACGTATCAACTTCACAGAAAGTCGTGAAGACAATGATGTGGA
TTTGCAAAAATCAAATATTCTCATGATTGGACCAACTGGTTCAGGGAAGACTTTCTTGGCTCAGACCTTGGCTCGAAGCT
TGAATGTTCCTTTCGCGATTGCGGATGCGACATCATTGACAGAGGCTGGTTATGTGGGTGAGGACGTGGAAAATATCCTC
CTCAAACTAATCCAAGCGGCAGACTTCAATATTGAACGTGCAGAACGTGGGATCATCTATGTCGACGAGATTGATAAGAT
TGCTAAAAAAGGTGAAAACGTATCAATCACTCGTGACGTTTCTGGTGAAGGGGTTCAACAAGCCCTCTTGAAGATTATCG
AAGGAACAGTAGCTAGCGTTCCACCTCAAGGTGGCCGTAAACACCCTAACCAAGAGATGATTCAAATTGATACGAAGAAT
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGTTT
TGGTCAAAATAATAAGGCTATTGATGATGACTCATCATACATGCAGGAAATTGTGGCTGAAGATATCCAAAAATTTGGTC
TTATCCCTGAGTTTATCGGACGTTTGCCAGTCCTTGCGGCCCTTGAACAGTTAACGGTTGACGACTTGGTTCGTATCTTG
ACAGAGCCTAGAAATGCCTTGGTTAAACAGTATCAAACCCTCTTGTCTTATGATGGAGTTGAACTGGAGTTTGACCAAGA
TGCTCTTGAAGCTATTGCAAGTAAGGCGATTGAACGTAAGACTGGTGCGCGTGGGCTTCGCTCTATCATTGAAGAAGTCA
TGATGGATGTCATGTTTGAAATTCCTAGCCAGGAAGATGTGACTAAGGTTCGTATTACTAAAGAAGCCGTTGACGGTACA
GCTGCTCCAGTTTTGGAAATAGCGTAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.731

100

0.9
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.606

98.284

0.566

Multiple sequence alignment