Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   KIN90_RS17340 Genome accession   NZ_CP074879
Coordinates   3401453..3402052 (+) Length   199 a.a.
NCBI ID   WP_214148297.1    Uniprot ID   -
Organism   Escherichia coli strain 2010C_5028     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3396453..3407052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIN90_RS17305 (KIN90_17050) dcyD 3397275..3398261 (+) 987 WP_001128238.1 D-cysteine desulfhydrase -
  KIN90_RS17310 (KIN90_17055) tcyL 3398276..3398944 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  KIN90_RS17315 (KIN90_17060) tcyN 3398941..3399693 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  KIN90_RS17320 (KIN90_17065) sdiA 3399923..3400645 (+) 723 WP_001154265.1 transcriptional regulator SdiA -
  KIN90_RS17325 (KIN90_17070) yecF 3400713..3400937 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  KIN90_RS17330 (KIN90_17075) yecU 3400924..3401100 (-) 177 WP_001342215.1 protein YecU -
  KIN90_RS17335 - 3401138..3401254 (-) 117 WP_001302039.1 hypothetical protein -
  KIN90_RS17340 (KIN90_17080) letA 3401453..3402052 (+) 600 WP_214148297.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  KIN90_RS17345 (KIN90_17085) uvrC 3402049..3403881 (+) 1833 WP_001283424.1 excinuclease ABC subunit UvrC Machinery gene
  KIN90_RS17350 (KIN90_17090) pgsA 3403938..3404486 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KIN90_RS17370 (KIN90_17110) - 3405479..3405760 (+) 282 WP_001303543.1 hypothetical protein -
  KIN90_RS17375 (KIN90_17115) - 3405949..3406089 (-) 141 WP_000078921.1 Hok/Gef family protein -
  KIN90_RS17380 (KIN90_17120) - 3406280..3406540 (-) 261 WP_000488107.1 ogr/Delta-like zinc finger family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21679.04 Da        Isoelectric Point: 6.8567

>NTDB_id=494575 KIN90_RS17340 WP_214148297.1 3401453..3402052(+) (letA) [Escherichia coli strain 2010C_5028]
MLEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAA
GYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPK
TVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 600 bp        

>NTDB_id=494575 KIN90_RS17340 WP_214148297.1 3401453..3402052(+) (letA) [Escherichia coli strain 2010C_5028]
ATTCTGGAAGATATAAAGGGTATAAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGTCGGGCAAA
TGCCGTTGACGTGGTGCTAATGGACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCA
CAGCTGATGTCAAAATCATCATGCTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCG
GGCTACCTCAGCAAAGGCGCGGCTCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGC
TTCTGACATCGCTCAACAAATGGCGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAAC
GTGAATTGCAGATTATGCTGATGATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAA
ACGGTGAACAGCTACCGCTATCGTATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCG
CCATGGTCTGTGTAATGCGGAGACATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(2-96)

Bacterial regulatory proteins, luxR family (GerE)

(130-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

47.872

94.472

0.452
  letA Legionella pneumophila strain ERS1305867

47.872

94.472

0.452