Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KIN90_RS12710 Genome accession   NZ_CP074879
Coordinates   2483837..2484574 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2010C_5028     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2478837..2489574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIN90_RS12680 (KIN90_12475) yfiL 2478995..2479360 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KIN90_RS12685 (KIN90_12480) aroF 2479570..2480640 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KIN90_RS12690 (KIN90_12485) tyrA 2480651..2481772 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KIN90_RS12695 (KIN90_12490) pheA 2481815..2482975 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KIN90_RS12700 (KIN90_12495) pheL 2483074..2483121 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KIN90_RS12705 (KIN90_12500) raiA 2483225..2483566 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KIN90_RS12710 (KIN90_12505) comL 2483837..2484574 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KIN90_RS12715 (KIN90_12510) rluD 2484709..2485689 (+) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KIN90_RS12720 (KIN90_12515) yfiH 2485686..2486417 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  KIN90_RS12725 (KIN90_12520) clpC 2486547..2489120 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=494562 KIN90_RS12710 WP_000197686.1 2483837..2484574(-) (comL) [Escherichia coli strain 2010C_5028]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=494562 KIN90_RS12710 WP_000197686.1 2483837..2484574(-) (comL) [Escherichia coli strain 2010C_5028]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376