Detailed information NTG0494123

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IHJ55_RS07035
• Genome accession: NZ_CP063242
• Coordinates: 1561614..1562459 (+)
• Length: 281 a.a.
• NCBI ID: WP_010302946.1
• Uniprot ID: A0AAI9L1D5
• Organism: Pectobacterium carotovorum strain XP-13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1556614..1567459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHJ55_RS07005 (IHJ55_07005)	gspI	1557039..1557404 (+)	366	WP_010302972.1	type II secretion system minor pseudopilin GspI	-
IHJ55_RS07010 (IHJ55_07010)	gspJ	1557404..1558054 (+)	651	WP_203471006.1	type II secretion system minor pseudopilin GspJ	-
IHJ55_RS07015 (IHJ55_07015)	gspK	1558051..1559037 (+)	987	WP_039538752.1	type II secretion system minor pseudopilin GspK	-
IHJ55_RS07020 (IHJ55_07020)	gspL	1559034..1560311 (+)	1278	WP_203471007.1	type II secretion system protein GspL	-
IHJ55_RS07025 (IHJ55_07025)	gspM	1560308..1560802 (+)	495	WP_010302957.1	type II secretion system protein GspM	-
IHJ55_RS07030 (IHJ55_07030)	-	1560792..1561538 (+)	747	WP_130640256.1	type II secretion system protein N	-
IHJ55_RS07035 (IHJ55_07035)	pilD	1561614..1562459 (+)	846	WP_010302946.1	prepilin peptidase	Machinery gene
IHJ55_RS07040 (IHJ55_07040)	ypdK	1562620..1562694 (-)	75	WP_099606229.1	membrane protein YpdK	-
IHJ55_RS07045 (IHJ55_07045)	-	1563050..1564075 (-)	1026	WP_198998593.1	LLM class flavin-dependent oxidoreductase	-
IHJ55_RS07050 (IHJ55_07050)	-	1564398..1565462 (+)	1065	WP_203471008.1	ABC transporter substrate-binding protein	-
IHJ55_RS07055 (IHJ55_07055)	-	1565459..1566496 (+)	1038	WP_039545335.1	FecCD family ABC transporter permease	-
IHJ55_RS07060 (IHJ55_07060)	-	1566498..1567268 (+)	771	WP_203471009.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31271.14 Da
• Isoelectric Point: 6.4529

>NTDB_id=494123 IHJ55_RS07035 WP_010302946.1 1561614..1562459(+) (pilD) [Pectobacterium carotovorum strain XP-13]
MDDLREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGVADSDPDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGLRKEDTAKPLAFGPWLAIGGVFGVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=494123 IHJ55_RS07035 WP_010302946.1 1561614..1562459(+) (pilD) [Pectobacterium carotovorum strain XP-13]
GTGGACGATTTAAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGGGCGCTGGGCGTGTTGGGGTTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCGTGGCCGATTCCGATCCTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCTATT
GCAGTAAAAGATAATATCCCGCTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGCCATCAATCGGTCTCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATTCTGCTGTCCTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGTTGCTGTTTAATCTGTCGGGGACATTTGTCTCATTGAACGATGCCGTAGTCGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTACTTTATTGGGCATTCAAATACGCAACGGGCAAAGAAGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGGGCTTGGCTTGGCTGGCAGGCATTGCCCAATCTGGTTTTGGTGGCGGCGCTGAGT
GGGCTGGTCGTGACTCTCATCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATCGGCGGGGTGTTCGGCGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.292	96.441	0.495
pilD	Vibrio campbellii strain DS40M4	47.037	96.085	0.452
pilD	Neisseria gonorrhoeae MS11	46.36	92.883	0.431
pilD	Acinetobacter baumannii D1279779	43.223	97.153	0.42
pilD	Acinetobacter nosocomialis M2	42.857	97.153	0.416