Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KIM23_RS21720 Genome accession   NZ_CP074861
Coordinates   4234216..4234953 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C_3963     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4229216..4239953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM23_RS21705 (KIM23_21430) clpC 4229670..4232243 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KIM23_RS21710 (KIM23_21435) yfiH 4232373..4233104 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  KIM23_RS21715 (KIM23_21440) rluD 4233101..4234081 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KIM23_RS21720 (KIM23_21445) comL 4234216..4234953 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KIM23_RS21725 (KIM23_21450) raiA 4235224..4235565 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KIM23_RS21730 (KIM23_21455) pheL 4235669..4235716 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KIM23_RS21735 (KIM23_21460) pheA 4235815..4236975 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KIM23_RS21740 (KIM23_21465) tyrA 4237018..4238139 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KIM23_RS21745 (KIM23_21470) aroF 4238150..4239220 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KIM23_RS21750 (KIM23_21475) yfiL 4239430..4239795 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=494033 KIM23_RS21720 WP_000197686.1 4234216..4234953(+) (comL) [Escherichia coli strain 2013C_3963]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=494033 KIM23_RS21720 WP_000197686.1 4234216..4234953(+) (comL) [Escherichia coli strain 2013C_3963]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376