Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   INR79_RS05845 Genome accession   NZ_CP063199
Coordinates   1297178..1298569 (+) Length   463 a.a.
NCBI ID   WP_022603175.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43132     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292178..1303569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS05825 (INR79_05825) rsxB 1292705..1293283 (-) 579 WP_004408179.1 electron transport complex subunit RsxB -
  INR79_RS05830 (INR79_05830) rsxA 1293283..1293864 (-) 582 WP_022550090.1 electron transport complex subunit RsxA -
  INR79_RS05840 (INR79_05840) uvrB 1294896..1296926 (+) 2031 WP_022599744.1 excinuclease ABC subunit UvrB -
  INR79_RS05845 (INR79_05845) luxO 1297178..1298569 (+) 1392 WP_022603175.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  INR79_RS05850 (INR79_05850) - 1298600..1298947 (+) 348 WP_022550093.1 Hpt domain-containing protein -
  INR79_RS05855 (INR79_05855) yvcK 1298936..1299823 (-) 888 WP_004408174.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  INR79_RS05860 (INR79_05860) moaA 1300148..1301140 (+) 993 WP_022591758.1 GTP 3',8-cyclase MoaA -
  INR79_RS05865 (INR79_05865) moaB 1301217..1301729 (+) 513 WP_004408168.1 molybdenum cofactor biosynthesis protein B -
  INR79_RS05870 (INR79_05870) moaC 1301739..1302215 (+) 477 WP_004408166.1 cyclic pyranopterin monophosphate synthase MoaC -
  INR79_RS05875 (INR79_05875) moaD 1302215..1302460 (+) 246 WP_004408164.1 molybdopterin synthase sulfur carrier subunit -
  INR79_RS05880 (INR79_05880) moaE 1302464..1302925 (+) 462 WP_223096367.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51163.24 Da        Isoelectric Point: 4.9746

>NTDB_id=493804 INR79_RS05845 WP_022603175.1 1297178..1298569(+) (luxO) [Vibrio sp. SCSIO 43132]
MQDTTSNPNPKYLLMVEDTASVAALYRSYLSPLGLDITIVGTGKDAVESLEERTPDLILLDLRLPDMTGMDVLSSVKSNY
PDVPVIFMTAHGSIDTAVEAMRKGAQDFLIKPCEADRLRVTVNNAIRKAGKLRSPSSEPDNNYQGFIGSSQTMQAVYRTI
DSAAPSKASVFITGESGTGKEVCAEAIHAASKRGENPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRDR
GEDVVEIAYSLLGYMSHEEGKGFVRFSQQVVDKFIEYEWPGNVRQLQNVLRNAVVLNHGSEITLNMLPPPLNLPSVSDLK
QVNAYDAKSTKLSVEEIRPLWLTEKSAIEQAIEACEGNIPKAAGYLDVSPSTLYRKLQAWKEQ

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=493804 INR79_RS05845 WP_022603175.1 1297178..1298569(+) (luxO) [Vibrio sp. SCSIO 43132]
ATGCAAGACACAACTTCTAACCCCAATCCTAAATACCTATTGATGGTGGAGGATACCGCCTCAGTAGCAGCGCTCTATCG
ATCTTACCTCAGTCCACTGGGGCTGGACATTACTATTGTCGGAACAGGTAAAGATGCAGTTGAAAGCCTGGAAGAGCGAA
CACCAGACCTGATTCTTCTCGACTTACGCCTTCCTGATATGACGGGCATGGATGTCCTTTCTTCGGTGAAATCAAACTAC
CCCGATGTTCCTGTTATTTTTATGACCGCACACGGTTCGATTGATACCGCCGTTGAGGCAATGCGTAAGGGTGCTCAGGA
CTTTTTAATTAAGCCTTGTGAGGCAGACCGCCTGCGTGTAACGGTCAATAACGCCATTCGCAAAGCAGGGAAACTTCGTT
CTCCAAGCAGCGAACCCGATAACAACTACCAGGGCTTTATTGGCAGTAGCCAGACCATGCAGGCTGTTTACCGAACTATC
GACTCCGCGGCTCCCAGTAAAGCGTCAGTATTTATTACGGGCGAAAGTGGTACCGGTAAAGAAGTGTGTGCAGAAGCGAT
TCATGCCGCCAGTAAACGTGGTGAAAACCCGTTTATTGCCATCAACTGTGCTGCAATACCAAAAGACCTGATTGAAAGTG
AACTGTTTGGTCACGTGAAAGGGGCGTTTACCGGGGCATCAACCGACAGGCAGGGTGCCGCAGAGCTTGCAGACGGCGGT
ACGCTGTTTTTGGATGAACTGTGTGAAATGGATCTGGATCTGCAAACCAAGCTGCTTAGATTTATTCAAACGGGTACCTT
CCAAAAGGTTGGTTCTTCTAAAATGAAGAGTGTAGACGTACGCTTTGTGTGTGCGACTAACCGTGACCCCTGGAAAGAAG
TTCAGGAAGGGCGCTTCCGAGAAGATTTGTATTACCGTTTGTATGTCATTCCACTGCACCTTCCTCCTTTGCGAGACAGA
GGAGAAGATGTGGTTGAGATTGCTTATTCGTTACTCGGTTACATGTCTCATGAAGAGGGTAAAGGGTTTGTTCGATTCTC
GCAGCAAGTCGTTGATAAATTTATTGAATACGAATGGCCGGGTAATGTTCGTCAGCTTCAGAATGTGCTTCGTAATGCCG
TAGTACTCAATCATGGTAGCGAGATCACATTAAACATGTTGCCACCGCCATTAAATTTGCCTTCCGTATCAGATTTGAAG
CAAGTAAATGCATATGACGCAAAATCAACTAAACTCTCAGTAGAAGAAATTCGACCACTGTGGCTTACCGAAAAAAGTGC
GATAGAACAAGCAATAGAGGCCTGTGAAGGAAATATTCCAAAGGCTGCGGGTTATTTGGATGTCAGCCCATCTACCTTGT
ATCGCAAGCTACAAGCTTGGAAAGAACAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

82.511

96.328

0.795
  pilR Pseudomonas aeruginosa PAK

39.286

96.76

0.38