Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   INR79_RS02485 Genome accession   NZ_CP063199
Coordinates   522872..523486 (-) Length   204 a.a.
NCBI ID   WP_004397669.1    Uniprot ID   A0AAV2VQY2
Organism   Vibrio sp. SCSIO 43132     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 517872..528486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS02475 (INR79_02475) aceF 519459..521057 (+) 1599 WP_223095896.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  INR79_RS02480 (INR79_02480) lpdA 521303..522733 (+) 1431 WP_022589429.1 dihydrolipoyl dehydrogenase -
  INR79_RS02485 (INR79_02485) opaR 522872..523486 (-) 615 WP_004397669.1 TetR/AcrR family transcriptional regulator Regulator
  INR79_RS02490 (INR79_02490) hpt 523741..524274 (+) 534 WP_004397670.1 hypoxanthine phosphoribosyltransferase -
  INR79_RS02495 (INR79_02495) - 524369..525580 (-) 1212 WP_223095898.1 multifunctional CCA addition/repair protein -
  INR79_RS02500 (INR79_02500) - 525664..527271 (+) 1608 WP_223095900.1 ExeA family protein -
  INR79_RS02505 (INR79_02505) - 527264..527986 (+) 723 WP_223095902.1 general secretion pathway protein GspB -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23439.59 Da        Isoelectric Point: 5.0114

>NTDB_id=493803 INR79_RS02485 WP_004397669.1 522872..523486(-) (opaR) [Vibrio sp. SCSIO 43132]
MDTVKKRPRTRLSPQKRKEQLHDIAIEVFAKRGIGRGGHADIAEIAQVSVATVFNYFQTREDLVDEVLSQVEKQYALFIN
ESLKVDATAEENLTSLTQNIIKAALDGTHWMKVWFEWSTSTREEVWPLFLSSNEESQKRIEDMFLTAMERGEVCDEHKAE
DLAKLLHGICYSLYVQANRNPDPEYLEGLVGSFLGMLCIYKQDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=493803 INR79_RS02485 WP_004397669.1 522872..523486(-) (opaR) [Vibrio sp. SCSIO 43132]
ATGGATACAGTAAAAAAACGTCCAAGAACAAGGCTATCTCCACAAAAGCGTAAAGAACAGCTTCACGATATTGCTATCGA
AGTGTTCGCAAAACGCGGCATCGGTCGCGGGGGTCACGCTGATATCGCAGAAATTGCACAGGTTTCTGTTGCAACCGTAT
TCAACTACTTCCAAACACGTGAAGATTTGGTTGATGAAGTACTGAGTCAGGTTGAAAAGCAATACGCGCTATTCATCAAT
GAAAGCTTGAAGGTTGACGCAACAGCTGAAGAAAACCTGACAAGCCTAACGCAAAACATCATCAAAGCGGCACTGGATGG
CACTCACTGGATGAAAGTCTGGTTTGAGTGGAGCACATCCACTCGTGAAGAAGTGTGGCCACTGTTCCTGTCTAGCAACG
AAGAGTCTCAAAAACGTATTGAAGACATGTTCCTGACAGCAATGGAGCGTGGTGAAGTATGTGACGAGCATAAAGCCGAA
GACTTAGCGAAACTGCTTCACGGCATCTGCTACTCATTGTACGTACAGGCAAACCGTAACCCGGATCCTGAGTACTTAGA
AGGTTTGGTTGGAAGCTTCCTTGGCATGCTTTGCATTTACAAGCAAGACCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(24-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

61.275

100

0.613
  hapR Vibrio cholerae C6706

59.5

98.039

0.583
  hapR Vibrio cholerae strain A1552

59.5

98.039

0.583