Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KIM26_RS06710 Genome accession   NZ_CP074853
Coordinates   1345219..1345956 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 7_11_88A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1340219..1350956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM26_RS06680 (KIM26_06630) yfiL 1340377..1340742 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KIM26_RS06685 (KIM26_06635) aroF 1340952..1342022 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KIM26_RS06690 (KIM26_06640) tyrA 1342033..1343154 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KIM26_RS06695 (KIM26_06645) pheA 1343197..1344357 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KIM26_RS06700 (KIM26_06650) pheL 1344456..1344503 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KIM26_RS06705 (KIM26_06655) raiA 1344607..1344948 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KIM26_RS06710 (KIM26_06660) comL 1345219..1345956 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KIM26_RS06715 (KIM26_06665) rluD 1346091..1347071 (+) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KIM26_RS06720 (KIM26_06670) yfiH 1347068..1347799 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  KIM26_RS06725 (KIM26_06675) clpC 1347929..1350502 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=493769 KIM26_RS06710 WP_000197686.1 1345219..1345956(-) (comL) [Escherichia coli strain 7_11_88A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=493769 KIM26_RS06710 WP_000197686.1 1345219..1345956(-) (comL) [Escherichia coli strain 7_11_88A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376