Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   IMZ18_RS20505 Genome accession   NZ_CP063151
Coordinates   3876021..3876140 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3871021..3881140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS20485 (IMZ18_20485) pbpG 3871391..3873466 (-) 2076 WP_014481227.1 transglycosylase domain-containing protein -
  IMZ18_RS20490 (IMZ18_20490) speE 3873668..3874498 (+) 831 WP_003227543.1 spermidine synthase -
  IMZ18_RS20495 (IMZ18_20495) speB 3874559..3875431 (+) 873 WP_003227545.1 agmatinase -
  IMZ18_RS20500 (IMZ18_20500) - 3875496..3875923 (-) 428 Protein_4020 YbaK/EbsC family protein -
  IMZ18_RS20505 (IMZ18_20505) phrF 3876021..3876140 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  IMZ18_RS20510 (IMZ18_20510) rapF 3876124..3877269 (-) 1146 WP_014481226.1 response regulator aspartate phosphatase RapF Regulator
  IMZ18_RS22835 - 3877272..3877502 (+) 231 Protein_4023 hypothetical protein -
  IMZ18_RS20515 (IMZ18_20515) ywhK 3877499..3878794 (+) 1296 WP_193490608.1 YncE family protein -
  IMZ18_RS20520 (IMZ18_20520) ywhL 3878833..3880209 (+) 1377 WP_014481223.1 YncE family protein -
  IMZ18_RS20525 (IMZ18_20525) albG 3880215..3880916 (-) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=493505 IMZ18_RS20505 WP_009968329.1 3876021..3876140(-) (phrF) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=493505 IMZ18_RS20505 WP_009968329.1 3876021..3876140(-) (phrF) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487