Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KIM30_RS21090 Genome accession   NZ_CP074835
Coordinates   4148924..4149661 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 7_14_50A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4143924..4154661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM30_RS21075 (KIM30_20815) clpC 4144378..4146951 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KIM30_RS21080 (KIM30_20820) yfiH 4147081..4147812 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  KIM30_RS21085 (KIM30_20825) rluD 4147809..4148789 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KIM30_RS21090 (KIM30_20830) comL 4148924..4149661 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KIM30_RS21095 (KIM30_20835) raiA 4149932..4150273 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KIM30_RS21100 (KIM30_20840) pheL 4150377..4150424 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KIM30_RS21105 (KIM30_20845) pheA 4150523..4151683 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KIM30_RS21110 (KIM30_20850) tyrA 4151726..4152847 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KIM30_RS21115 (KIM30_20855) aroF 4152858..4153928 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KIM30_RS21120 (KIM30_20860) yfiL 4154138..4154503 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=493475 KIM30_RS21090 WP_000197686.1 4148924..4149661(+) (comL) [Escherichia coli strain 7_14_50A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=493475 KIM30_RS21090 WP_000197686.1 4148924..4149661(+) (comL) [Escherichia coli strain 7_14_50A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376