Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IMY14_RS16950 Genome accession   NZ_CP063150
Coordinates   3232949..3233593 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3227949..3238593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS16915 mrpB 3229142..3229573 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  IMY14_RS16920 mrpC 3229573..3229914 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  IMY14_RS16925 mrpD 3229907..3231388 (+) 1482 WP_174616586.1 Na+/H+ antiporter subunit D -
  IMY14_RS16930 mrpE 3231394..3231870 (+) 477 WP_174616587.1 Na+/H+ antiporter subunit E -
  IMY14_RS16935 mrpF 3231870..3232154 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  IMY14_RS16940 mnhG 3232138..3232512 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  IMY14_RS16945 yuxO 3232551..3232931 (-) 381 WP_174616601.1 hotdog fold thioesterase -
  IMY14_RS16950 comA 3232949..3233593 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  IMY14_RS16955 - 3233674..3235974 (-) 2301 Protein_3312 histidine kinase -
  IMY14_RS16960 comX 3235986..3236150 (-) 165 WP_015384519.1 competence pheromone ComX -
  IMY14_RS16965 - 3236163..3237023 (-) 861 WP_015483633.1 polyprenyl synthetase family protein -
  IMY14_RS16970 degQ 3237208..3237348 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  IMY14_RS16975 - 3237570..3237695 (+) 126 WP_154796978.1 hypothetical protein -
  IMY14_RS16980 - 3237809..3238177 (+) 369 WP_015483634.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=493420 IMY14_RS16950 WP_003220716.1 3232949..3233593(-) (comA) [Bacillus subtilis strain s-16]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=493420 IMY14_RS16950 WP_003220716.1 3232949..3233593(-) (comA) [Bacillus subtilis strain s-16]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCATCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1