Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   SPNINV200_RS09540 Genome accession   NC_017593
Coordinates   1806186..1807223 (-) Length   345 a.a.
NCBI ID   WP_000727278.1    Uniprot ID   A0A4J2BD57
Organism   Streptococcus pneumoniae INV200     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1801186..1812223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNINV200_RS09515 (SPNINV200_17740) - 1801925..1803256 (-) 1332 WP_000390043.1 hemolysin family protein -
  SPNINV200_RS09520 (SPNINV200_17750) endA 1803547..1804371 (-) 825 WP_001036789.1 DNA-entry nuclease EndA Machinery gene
  SPNINV200_RS09525 (SPNINV200_17760) - 1804410..1804598 (-) 189 WP_001813390.1 DNA-directed RNA polymerase subunit beta -
  SPNINV200_RS09530 (SPNINV200_17770) murA 1804591..1805874 (-) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SPNINV200_RS09535 (SPNINV200_17780) - 1805898..1806128 (-) 231 WP_000250392.1 DUF1146 family protein -
  SPNINV200_RS09540 (SPNINV200_17790) sepM 1806186..1807223 (-) 1038 WP_000727278.1 SepM family pheromone-processing serine protease Regulator
  SPNINV200_RS09545 (SPNINV200_17800) coaD 1807207..1807695 (-) 489 WP_001280769.1 pantetheine-phosphate adenylyltransferase -
  SPNINV200_RS09550 (SPNINV200_17810) rsmD 1807685..1808224 (-) 540 WP_000706963.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SPNINV200_RS09555 (SPNINV200_17820) asnA 1808289..1809281 (-) 993 WP_000747993.1 aspartate--ammonia ligase -
  SPNINV200_RS09565 (SPNINV200_17830) - 1809393..1810076 (-) 684 WP_001016917.1 Bax inhibitor-1/YccA family protein -
  SPNINV200_RS09570 (SPNINV200_17840) - 1810132..1810872 (-) 741 WP_000152703.1 TrmH family RNA methyltransferase -
  SPNINV200_RS09575 (SPNINV200_17850) - 1810906..1811184 (+) 279 WP_001174612.1 acylphosphatase -
  SPNINV200_RS09580 (SPNINV200_17860) yidC 1811262..1812188 (+) 927 WP_000835955.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37510.55 Da        Isoelectric Point: 5.0724

>NTDB_id=49342 SPNINV200_RS09540 WP_000727278.1 1806186..1807223(-) (sepM) [Streptococcus pneumoniae INV200]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNSP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=49342 SPNINV200_RS09540 WP_000727278.1 1806186..1807223(-) (sepM) [Streptococcus pneumoniae INV200]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACTTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACGGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAAATCATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGGCTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAGTCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4J2BD57

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60

98.551

0.591


Multiple sequence alignment