Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KIM32_RS22485 Genome accession   NZ_CP074826
Coordinates   4351077..4351814 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 7_26_9A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4346077..4356814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM32_RS22470 (KIM32_22185) clpC 4346531..4349104 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KIM32_RS22475 (KIM32_22190) yfiH 4349234..4349965 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  KIM32_RS22480 (KIM32_22195) rluD 4349962..4350942 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KIM32_RS22485 (KIM32_22200) comL 4351077..4351814 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KIM32_RS22490 (KIM32_22205) raiA 4352085..4352426 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KIM32_RS22495 (KIM32_22210) pheL 4352530..4352577 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KIM32_RS22500 (KIM32_22215) pheA 4352676..4353836 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KIM32_RS22505 (KIM32_22220) tyrA 4353879..4355000 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KIM32_RS22510 (KIM32_22225) aroF 4355011..4356081 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KIM32_RS22515 (KIM32_22230) yfiL 4356291..4356656 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=493317 KIM32_RS22485 WP_000197686.1 4351077..4351814(+) (comL) [Escherichia coli strain 7_26_9A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=493317 KIM32_RS22485 WP_000197686.1 4351077..4351814(+) (comL) [Escherichia coli strain 7_26_9A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376