Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   IMZ86_RS08925 Genome accession   NZ_CP063143
Coordinates   1886049..1886618 (-) Length   189 a.a.
NCBI ID   WP_002492866.1    Uniprot ID   A0A853V0X6
Organism   Staphylococcus lugdunensis strain IVK28     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1881049..1891618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ86_RS08890 (IMZ86_08890) - 1881309..1882610 (-) 1302 WP_037540755.1 ISL3 family transposase -
  IMZ86_RS08895 (IMZ86_08895) - 1883054..1883455 (-) 402 WP_037555125.1 DUF1433 domain-containing protein -
  IMZ86_RS08900 (IMZ86_08900) - 1883482..1883976 (+) 495 WP_062248860.1 hypothetical protein -
  IMZ86_RS08905 (IMZ86_08905) - 1884688..1884936 (-) 249 WP_002492864.1 hypothetical protein -
  IMZ86_RS08910 (IMZ86_08910) - 1884949..1885644 (-) 696 Protein_1738 minor capsid protein -
  IMZ86_RS08925 (IMZ86_08925) comK/comK1 1886049..1886618 (-) 570 WP_002492866.1 competence protein ComK Regulator
  IMZ86_RS08930 (IMZ86_08930) - 1886837..1887055 (+) 219 WP_002478404.1 IDEAL domain-containing protein -
  IMZ86_RS08935 (IMZ86_08935) - 1887131..1888117 (-) 987 WP_002492871.1 lipoate--protein ligase -
  IMZ86_RS08940 (IMZ86_08940) - 1888317..1888502 (+) 186 WP_002459484.1 YkvS family protein -
  IMZ86_RS08945 (IMZ86_08945) - 1888509..1889111 (+) 603 WP_002459485.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  IMZ86_RS08950 (IMZ86_08950) - 1889214..1890728 (-) 1515 WP_002478405.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22457.94 Da        Isoelectric Point: 9.6175

>NTDB_id=493313 IMZ86_RS08925 WP_002492866.1 1886049..1886618(-) (comK/comK1) [Staphylococcus lugdunensis strain IVK28]
MDKKTIYVIRKGDMVIRPIIDDYGHAQGTEIIKFDTTKERSPFKTQKIIERSCKFYGNNYLSKKAETSRIARINSKPPIL
LTPLFPTYFFPTHSDRQEENIWINMHFIVDIKPLKHRKSKVIFTNHETLIINVSFHSMWHQYINAIFYYYMVDKQSKMCS
NNPDMPIDYEKSSLNIYEALSQYSLLDNK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=493313 IMZ86_RS08925 WP_002492866.1 1886049..1886618(-) (comK/comK1) [Staphylococcus lugdunensis strain IVK28]
ATGGACAAAAAAACCATATATGTTATACGTAAAGGAGATATGGTCATACGACCCATTATCGACGATTATGGACATGCTCA
AGGAACAGAAATCATTAAATTTGACACCACAAAAGAAAGAAGCCCATTTAAAACGCAGAAAATTATAGAAAGATCTTGCA
AGTTTTACGGAAATAATTATCTTAGCAAAAAAGCAGAAACAAGTAGAATCGCTCGTATTAATAGCAAACCTCCGATATTA
CTCACTCCCTTATTCCCAACTTATTTTTTTCCAACACATTCTGACAGACAAGAAGAAAACATATGGATTAATATGCATTT
TATTGTAGATATTAAGCCTTTAAAGCACAGAAAAAGTAAAGTCATTTTTACTAATCATGAAACACTTATCATAAATGTGT
CATTTCATAGTATGTGGCATCAATATATAAATGCCATTTTTTATTACTACATGGTAGATAAACAATCTAAAATGTGTTCA
AATAACCCGGATATGCCTATTGATTATGAAAAATCCTCACTAAATATTTACGAAGCACTTTCCCAATATTCTCTATTAGA
TAATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V0X6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

69.312

100

0.693
  comK/comK1 Staphylococcus aureus N315

69.312

100

0.693