Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IMZ86_RS07990 Genome accession   NZ_CP063143
Coordinates   1684363..1685235 (-) Length   290 a.a.
NCBI ID   WP_002491838.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain IVK28     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1679363..1690235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ86_RS07975 (IMZ86_07975) xerC 1679738..1680631 (-) 894 WP_002491833.1 tyrosine recombinase XerC -
  IMZ86_RS07980 (IMZ86_07980) trmFO 1680763..1682070 (-) 1308 WP_002459294.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IMZ86_RS07985 (IMZ86_07985) topA 1682122..1684197 (-) 2076 WP_172412355.1 type I DNA topoisomerase -
  IMZ86_RS07990 (IMZ86_07990) dprA 1684363..1685235 (-) 873 WP_002491838.1 DNA-processing protein DprA Machinery gene
  IMZ86_RS07995 (IMZ86_07995) - 1685894..1687129 (-) 1236 WP_002491837.1 aminoacyltransferase -
  IMZ86_RS08000 (IMZ86_08000) sucD 1687290..1688198 (-) 909 WP_002478289.1 succinate--CoA ligase subunit alpha -
  IMZ86_RS08005 (IMZ86_08005) sucC 1688220..1689386 (-) 1167 WP_002493081.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33024.83 Da        Isoelectric Point: 7.9749

>NTDB_id=493312 IMZ86_RS07990 WP_002491838.1 1684363..1685235(-) (dprA) [Staphylococcus lugdunensis strain IVK28]
MDDIVLLKLRYSGIQAPQFQRLIHAYPNFLSFSEDDLLNLLSKTEIKKWFGDIAAQYKRISEDYILTSLYDASVKFITIN
SQCYSTLLKEIYDFPPILFYRGDISLLNSNTTLAVVGSRKATSYSYKALDFLFSQFNRRFTIVSGLAKGADSMAHELAIQ
HHHATIAVLGFGHLTHYPKETYILRQKIEAHHLSISEYLPFEPVTKYHFPQRNRLISGISKGVLITEAEKRSGSQITIAH
ALDQNRNVYVLPGDLFNPLTQGNLYRAREGACIVTGAEDILMDYDINKVF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=493312 IMZ86_RS07990 WP_002491838.1 1684363..1685235(-) (dprA) [Staphylococcus lugdunensis strain IVK28]
GTGGACGATATTGTTTTATTAAAATTACGTTATAGTGGTATACAAGCGCCTCAATTTCAACGGCTTATACATGCGTACCC
TAACTTTTTATCATTTTCAGAGGATGATTTACTTAATTTATTATCGAAGACAGAAATTAAAAAATGGTTCGGAGACATAG
CTGCACAATACAAACGGATTTCTGAAGATTATATTTTAACATCATTATACGATGCCTCTGTCAAATTTATCACTATCAAT
AGCCAATGTTATTCTACCTTATTAAAAGAAATTTATGATTTTCCACCAATCCTATTTTATCGTGGTGATATTTCACTCCT
TAATTCAAACACTACATTAGCCGTTGTCGGTTCTCGTAAAGCCACAAGTTATTCCTACAAAGCTTTAGACTTTTTATTTA
GCCAATTTAATCGTCGCTTCACGATTGTTTCAGGTTTAGCCAAAGGAGCCGATAGCATGGCACACGAATTAGCTATACAA
CACCATCATGCGACAATCGCAGTGCTTGGATTTGGACATCTCACACATTATCCTAAAGAAACATATATTTTACGTCAAAA
AATTGAAGCTCATCACTTATCAATCAGTGAATATTTACCTTTCGAACCAGTAACGAAATATCATTTTCCACAACGAAATC
GCTTAATAAGCGGTATTTCTAAAGGTGTACTGATTACCGAAGCTGAAAAACGTAGTGGTAGTCAGATTACAATCGCACAT
GCACTTGACCAAAATAGAAATGTTTATGTTCTTCCAGGAGATCTATTTAATCCACTTACACAAGGTAATTTATATCGTGC
ACGAGAAGGAGCGTGTATTGTTACAGGAGCTGAAGATATTTTAATGGATTATGATATTAATAAAGTTTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48.475

100

0.493
  dprA Staphylococcus aureus MW2

48.475

100

0.493