Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | IMZ86_RS06615 | Genome accession | NZ_CP063143 |
| Coordinates | 1387688..1388662 (+) | Length | 324 a.a. |
| NCBI ID | WP_037555185.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain IVK28 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1382688..1393662
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMZ86_RS06580 (IMZ86_06580) | rpmG | 1383112..1383261 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| IMZ86_RS06585 (IMZ86_06585) | - | 1383511..1384047 (+) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| IMZ86_RS06590 (IMZ86_06590) | - | 1384064..1385521 (+) | 1458 | WP_002491909.1 | rhomboid family protein | - |
| IMZ86_RS06595 (IMZ86_06595) | - | 1385505..1385708 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| IMZ86_RS06600 (IMZ86_06600) | - | 1385705..1386691 (+) | 987 | WP_002491907.1 | ROK family glucokinase | - |
| IMZ86_RS06605 (IMZ86_06605) | - | 1386691..1387014 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| IMZ86_RS06610 (IMZ86_06610) | - | 1387018..1387641 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| IMZ86_RS06615 (IMZ86_06615) | comGA | 1387688..1388662 (+) | 975 | WP_037555185.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| IMZ86_RS06620 (IMZ86_06620) | comGB | 1388634..1389698 (+) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| IMZ86_RS06625 (IMZ86_06625) | comGC | 1389713..1390027 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| IMZ86_RS06630 (IMZ86_06630) | comGD | 1389960..1390454 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| IMZ86_RS06635 (IMZ86_06635) | - | 1390441..1390734 (+) | 294 | WP_002459018.1 | hypothetical protein | - |
| IMZ86_RS06640 (IMZ86_06640) | - | 1390796..1391155 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| IMZ86_RS06645 (IMZ86_06645) | - | 1391309..1391827 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| IMZ86_RS06650 (IMZ86_06650) | gcvT | 1391997..1393088 (+) | 1092 | WP_037540763.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36979.86 Da Isoelectric Point: 8.2830
>NTDB_id=493306 IMZ86_RS06615 WP_037555185.1 1387688..1388662(+) (comGA) [Staphylococcus lugdunensis strain IVK28]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVYYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRNASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVYYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRNASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=493306 IMZ86_RS06615 WP_037555185.1 1387688..1388662(+) (comGA) [Staphylococcus lugdunensis strain IVK28]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTATATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAATTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAAATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTATATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAATTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAAATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.898 |
99.691 |
0.707 |
| comGA | Staphylococcus aureus N315 |
70.898 |
99.691 |
0.707 |