Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IMZ86_RS04375 Genome accession   NZ_CP063143
Coordinates   952188..952589 (+) Length   133 a.a.
NCBI ID   WP_002461219.1    Uniprot ID   A0A853V538
Organism   Staphylococcus lugdunensis strain IVK28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 945911..953775 952188..952589 within 0


Gene organization within MGE regions


Location: 945911..953775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ86_RS04345 (IMZ86_04345) tnpA 945911..946393 (+) 483 WP_062248827.1 IS200/IS605 family transposase -
  IMZ86_RS04350 (IMZ86_04350) - 946518..947492 (-) 975 WP_037540684.1 helix-turn-helix domain-containing protein -
  IMZ86_RS04355 (IMZ86_04355) - 947642..949396 (+) 1755 WP_037540683.1 ABC transporter ATP-binding protein -
  IMZ86_RS04360 (IMZ86_04360) - 949380..951100 (+) 1721 Protein_868 ABC transporter ATP-binding protein -
  IMZ86_RS04365 (IMZ86_04365) - 951099..951206 (+) 108 Protein_869 IS200/IS605 family transposase -
  IMZ86_RS04370 (IMZ86_04370) - 951546..951998 (-) 453 WP_002461221.1 YwpF-like family protein -
  IMZ86_RS04375 (IMZ86_04375) ssb 952188..952589 (+) 402 WP_002461219.1 single-stranded DNA-binding protein Machinery gene
  IMZ86_RS04380 (IMZ86_04380) - 953068..953775 (+) 708 WP_002492081.1 transglycosylase family protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15388.56 Da        Isoelectric Point: 6.7151

>NTDB_id=493294 IMZ86_RS04375 WP_002461219.1 952188..952589(+) (ssb) [Staphylococcus lugdunensis strain IVK28]
MLNKIVIVGRLTKDAQIYEKEEVKIATFCVATERNYKDDNNEQIVDYILCKAYGRTATNIEKYTSQGSLVGITGQMRSRK
YTKDQQTHFVTELYVETIKFMSSKGKTHEILEEHPTTNIQPFSVDEMKLLNIE

Nucleotide


Download         Length: 402 bp        

>NTDB_id=493294 IMZ86_RS04375 WP_002461219.1 952188..952589(+) (ssb) [Staphylococcus lugdunensis strain IVK28]
ATGTTAAATAAAATCGTAATCGTTGGACGATTAACTAAAGATGCCCAAATATACGAGAAAGAGGAGGTTAAAATTGCTAC
ATTTTGTGTGGCTACGGAAAGAAATTATAAAGATGATAACAACGAGCAAATCGTAGATTATATTCTATGTAAAGCATATG
GTAGGACTGCTACTAACATTGAAAAGTATACCAGTCAGGGATCATTGGTTGGTATTACAGGTCAAATGCGCTCAAGAAAG
TATACTAAAGACCAACAAACACATTTTGTTACAGAATTATACGTAGAAACTATTAAATTCATGTCCTCTAAAGGCAAAAC
ACACGAAATCCTCGAAGAACATCCAACTACTAATATTCAACCTTTTTCAGTTGATGAAATGAAACTCTTAAATATCGAAT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853V538

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

69.697

99.248

0.692
  ssb Staphylococcus aureus MW2

68.939

99.248

0.684