Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   INP90_RS01190 Genome accession   NZ_CP063124
Coordinates   246573..246935 (-) Length   120 a.a.
NCBI ID   WP_111387190.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 241573..251935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS01170 (INP90_01170) - 241711..242214 (-) 504 WP_178161895.1 surface-adhesin E family protein -
  INP90_RS01175 (INP90_01175) pflA 242268..243008 (-) 741 WP_049364777.1 pyruvate formate lyase 1-activating protein -
  INP90_RS01180 (INP90_01180) pflB 243138..245450 (-) 2313 WP_197559780.1 formate C-acetyltransferase -
  INP90_RS01185 (INP90_01185) focA 245504..246358 (-) 855 WP_197559781.1 formate transporter FocA -
  INP90_RS01190 (INP90_01190) comE1/comEA 246573..246935 (-) 363 WP_111387190.1 helix-hairpin-helix domain-containing protein Machinery gene
  INP90_RS01195 (INP90_01195) - 247081..247398 (-) 318 WP_005695251.1 heavy metal-binding domain-containing protein -
  INP90_RS01200 (INP90_01200) rdgB 247437..248036 (-) 600 WP_070776201.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  INP90_RS01205 (INP90_01205) - 248168..248539 (+) 372 WP_070776202.1 DUF305 domain-containing protein -
  INP90_RS01210 (INP90_01210) ispH 248588..249532 (-) 945 WP_049364772.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  INP90_RS01215 (INP90_01215) lspA 249535..250020 (-) 486 WP_070776203.1 signal peptidase II -
  INP90_RS01220 (INP90_01220) glmU 250137..251507 (-) 1371 WP_070776204.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13095.99 Da        Isoelectric Point: 9.6912

>NTDB_id=493192 INP90_RS01190 WP_111387190.1 246573..246935(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C113_1]
MKLMKHLFSSLFIAGAMLSTQAIAEEKTAEQAQPQTQVQQQTAVQAPSQTVQQTVSDKLNINTASASDIQKALIGIGAKK
AEAIVQYREKHGNFTVAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=493192 INP90_RS01190 WP_111387190.1 246573..246935(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C113_1]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTATTGCAGGCGCGATGTTGAGTACACAAGCAATTGCAGAAGAAAA
GACAGCAGAGCAGGCTCAACCGCAAACGCAAGTGCAGCAACAAACTGCTGTGCAAGCACCATCACAAACTGTACAACAAA
CGGTGAGTGATAAATTAAATATCAATACCGCTAGCGCATCAGACATTCAAAAAGCACTGATTGGTATTGGGGCGAAAAAA
GCAGAAGCCATTGTGCAGTATCGTGAAAAACACGGTAATTTCACTGTGGCAGAACAACTACTTGAAGTACAAGGCATTGG
CAAAGCCACACTAGAGAAAAACCGAGATCGTATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

64.103

97.5

0.625
  comEA/comE1 Glaesserella parasuis strain SC1401

51.695

98.333

0.508