Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   INP93_RS01385 Genome accession   NZ_CP063121
Coordinates   279282..279644 (-) Length   120 a.a.
NCBI ID   WP_049372704.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C130_2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274282..284644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP93_RS01365 (INP93_01365) - 274417..274920 (-) 504 WP_197544940.1 surface-adhesin E family protein -
  INP93_RS01370 (INP93_01370) pflA 274974..275714 (-) 741 WP_049364777.1 pyruvate formate lyase 1-activating protein -
  INP93_RS01375 (INP93_01375) pflB 275845..278157 (-) 2313 WP_197544941.1 formate C-acetyltransferase -
  INP93_RS01380 (INP93_01380) focA 278213..279067 (-) 855 WP_049364775.1 formate transporter FocA -
  INP93_RS01385 (INP93_01385) comE1/comEA 279282..279644 (-) 363 WP_049372704.1 helix-hairpin-helix domain-containing protein Machinery gene
  INP93_RS01390 (INP93_01390) - 279790..280107 (-) 318 WP_005695251.1 heavy metal-binding domain-containing protein -
  INP93_RS01395 (INP93_01395) rdgB 280146..280745 (-) 600 WP_049364773.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  INP93_RS01400 (INP93_01400) - 280877..281248 (+) 372 WP_049357924.1 DUF305 domain-containing protein -
  INP93_RS01405 (INP93_01405) ispH 281297..282241 (-) 945 WP_049376185.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  INP93_RS01410 (INP93_01410) lspA 282238..282729 (-) 492 WP_049376184.1 signal peptidase II -
  INP93_RS01415 (INP93_01415) glmU 282846..284216 (-) 1371 WP_070582688.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13110.01 Da        Isoelectric Point: 9.6912

>NTDB_id=493099 INP93_RS01385 WP_049372704.1 279282..279644(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C130_2]
MKLMKHLFSSLFIAGAMLSTQAIAEEKTAEQAQPQTQVQQQTAVQAPSQTVQQTVSDKLNINTASASEIQKALIGIGAKK
AEAIVQYREKHGNFTVAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=493099 INP93_RS01385 WP_049372704.1 279282..279644(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C130_2]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTATTGCAGGCGCGATGTTGAGTACACAAGCAATTGCAGAAGAAAA
GACAGCAGAGCAGGCTCAACCGCAAACGCAAGTGCAGCAACAAACTGCTGTGCAAGCACCATCACAAACTGTACAACAAA
CGGTGAGTGATAAATTAAATATCAATACCGCTAGCGCATCAGAAATTCAAAAAGCACTGATTGGTATTGGGGCAAAAAAA
GCAGAAGCCATTGTGCAGTATCGTGAAAAACACGGTAATTTCACTGTAGCAGAACAACTACTTGAAGTACAAGGCATTGG
CAAAGCCACACTAGAAAAAAACCGAGATCGTATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

64.957

97.5

0.633
  comEA/comE1 Glaesserella parasuis strain SC1401

52.542

98.333

0.517