Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KIM35_RS17150 Genome accession   NZ_CP074815
Coordinates   3368727..3369203 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain 7_33_80A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3363727..3374203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM35_RS17120 (KIM35_16870) - 3364182..3364532 (+) 351 Protein_3348 IrmA family protein -
  KIM35_RS17125 (KIM35_16875) - 3364611..3364844 (+) 234 WP_001119729.1 DUF905 family protein -
  KIM35_RS17130 (KIM35_16880) - 3364944..3365321 (+) 378 Protein_3350 DUF932 domain-containing protein -
  KIM35_RS17135 (KIM35_16885) - 3365834..3367612 (+) 1779 WP_001243195.1 reverse transcriptase/maturase family protein -
  KIM35_RS17140 (KIM35_16890) - 3367731..3368171 (+) 441 Protein_3352 DUF932 domain-containing protein -
  KIM35_RS17145 (KIM35_16895) - 3368226..3368711 (+) 486 WP_000849582.1 antirestriction protein -
  KIM35_RS17150 (KIM35_16900) radC 3368727..3369203 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  KIM35_RS17155 (KIM35_16905) yeeT 3369272..3369493 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  KIM35_RS17160 (KIM35_16910) - 3369656..3370024 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  KIM35_RS17165 (KIM35_16915) - 3370114..3370491 (+) 378 WP_000854757.1 TA system toxin CbtA family protein -
  KIM35_RS17170 (KIM35_16920) - 3370488..3370664 (+) 177 Protein_3358 DUF5983 family protein -
  KIM35_RS17175 (KIM35_16925) - 3370725..3370817 (+) 93 Protein_3359 DUF957 domain-containing protein -
  KIM35_RS17180 (KIM35_16930) - 3370976..3372004 (+) 1029 Protein_3360 IS110 family transposase -
  KIM35_RS17185 - 3372275..3372640 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  KIM35_RS17190 (KIM35_16940) tmaR 3372741..3373070 (-) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=493068 KIM35_RS17150 WP_001186725.1 3368727..3369203(+) (radC) [Escherichia coli strain 7_33_80A]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=493068 KIM35_RS17150 WP_001186725.1 3368727..3369203(+) (radC) [Escherichia coli strain 7_33_80A]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399