Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   INP95_RS01260 Genome accession   NZ_CP063117
Coordinates   259476..259838 (-) Length   120 a.a.
NCBI ID   WP_070590092.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 254476..264838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS01240 (INP95_01240) - 254613..255116 (-) 504 WP_070582679.1 surface-adhesin E family protein -
  INP95_RS01245 (INP95_01245) pflA 255170..255910 (-) 741 WP_049364777.1 pyruvate formate lyase 1-activating protein -
  INP95_RS01250 (INP95_01250) pflB 256040..258352 (-) 2313 WP_049364776.1 formate C-acetyltransferase -
  INP95_RS01255 (INP95_01255) focA 258408..259262 (-) 855 WP_049372705.1 formate transporter FocA -
  INP95_RS01260 (INP95_01260) comE1/comEA 259476..259838 (-) 363 WP_070590092.1 helix-hairpin-helix domain-containing protein Machinery gene
  INP95_RS01265 (INP95_01265) - 259984..260301 (-) 318 WP_005695251.1 heavy metal-binding domain-containing protein -
  INP95_RS01270 (INP95_01270) rdgB 260340..260939 (-) 600 WP_070776201.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  INP95_RS01275 (INP95_01275) - 261071..261442 (+) 372 WP_070776202.1 DUF305 domain-containing protein -
  INP95_RS01280 (INP95_01280) ispH 261491..262435 (-) 945 WP_197560738.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  INP95_RS01285 (INP95_01285) lspA 262432..262923 (-) 492 WP_197560739.1 signal peptidase II -
  INP95_RS01290 (INP95_01290) glmU 263040..264410 (-) 1371 WP_197560740.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13069.95 Da        Isoelectric Point: 8.5900

>NTDB_id=493035 INP95_RS01260 WP_070590092.1 259476..259838(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C142_1]
MKLMKHLFSSLFIAGAMLSTEALAEEKTAEQAQPQTQVQQQTAVQAPSQTVQQTVSDKLNINTASVSDIQKALIGIGAKK
AEAIVQYREKHGSFTAAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=493035 INP95_RS01260 WP_070590092.1 259476..259838(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C142_1]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTATTGCAGGCGCGATGTTGAGCACAGAAGCGCTTGCAGAAGAAAA
AACAGCTGAGCAGGCTCAACCGCAAACGCAAGTGCAGCAACAAACAGCTGTACAAGCACCATCACAAACAGTACAACAAA
CGGTGAGTGATAAATTAAATATCAATACCGCTAGCGTATCAGACATTCAAAAAGCGCTGATTGGTATTGGGGCGAAAAAA
GCAGAAGCCATTGTGCAATACCGTGAAAAACACGGTAGTTTCACTGCGGCAGAACAACTACTTGAAGTACAAGGCATTGG
TAAAGCTACGTTAGAAAAAAACCGAGATCGTATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

62.393

97.5

0.608
  comEA/comE1 Glaesserella parasuis strain SC1401

50.847

98.333

0.5