Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   INP97_RS01205 Genome accession   NZ_CP063113
Coordinates   248519..248881 (-) Length   120 a.a.
NCBI ID   WP_111387190.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C147_1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 243519..253881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP97_RS01185 (INP97_01185) - 243655..244158 (-) 504 WP_070868327.1 surface-adhesin E family protein -
  INP97_RS01190 (INP97_01190) pflA 244212..244952 (-) 741 WP_049364777.1 pyruvate formate lyase 1-activating protein -
  INP97_RS01195 (INP97_01195) pflB 245082..247394 (-) 2313 WP_049364776.1 formate C-acetyltransferase -
  INP97_RS01200 (INP97_01200) focA 247450..248304 (-) 855 WP_049372705.1 formate transporter FocA -
  INP97_RS01205 (INP97_01205) comE1/comEA 248519..248881 (-) 363 WP_111387190.1 helix-hairpin-helix domain-containing protein Machinery gene
  INP97_RS01210 (INP97_01210) - 249027..249344 (-) 318 WP_005695251.1 heavy metal-binding domain-containing protein -
  INP97_RS01215 (INP97_01215) rdgB 249383..249982 (-) 600 WP_197562780.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  INP97_RS01220 (INP97_01220) - 250114..250485 (+) 372 WP_197562781.1 DUF305 domain-containing protein -
  INP97_RS01225 (INP97_01225) ispH 250534..251478 (-) 945 WP_049364772.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  INP97_RS01230 (INP97_01230) lspA 251475..251966 (-) 492 WP_197562782.1 signal peptidase II -
  INP97_RS01235 (INP97_01235) glmU 252083..253453 (-) 1371 WP_197562783.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13095.99 Da        Isoelectric Point: 9.6912

>NTDB_id=492972 INP97_RS01205 WP_111387190.1 248519..248881(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C147_1]
MKLMKHLFSSLFIAGAMLSTQAIAEEKTAEQAQPQTQVQQQTAVQAPSQTVQQTVSDKLNINTASASDIQKALIGIGAKK
AEAIVQYREKHGNFTVAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=492972 INP97_RS01205 WP_111387190.1 248519..248881(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C147_1]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTATTGCAGGCGCGATGTTGAGTACACAAGCAATTGCAGAAGAAAA
GACAGCAGAGCAGGCTCAACCGCAAACGCAAGTGCAGCAACAAACTGCTGTGCAAGCACCATCACAAACTGTACAACAAA
CGGTGAGTGATAAATTAAATATCAATACCGCTAGCGCATCAGACATTCAAAAAGCACTGATTGGTATTGGGGCGAAAAAA
GCAGAAGCCATTGTGCAGTATCGTGAAAAACACGGTAATTTCACTGTGGCAGAACAACTACTTGAAGTACAAGGCATTGG
CAAAGCCACACTAGAGAAAAACCGAGATCGTATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

64.103

97.5

0.625
  comEA/comE1 Glaesserella parasuis strain SC1401

51.695

98.333

0.508