Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   INP98_RS03775 Genome accession   NZ_CP063112
Coordinates   777704..778066 (+) Length   120 a.a.
NCBI ID   WP_197570383.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 772704..783066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS03745 (INP98_03740) glmU 773132..774502 (+) 1371 WP_197570381.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  INP98_RS03750 (INP98_03745) lspA 774619..775110 (+) 492 WP_178411014.1 signal peptidase II -
  INP98_RS03755 (INP98_03750) ispH 775107..776051 (+) 945 WP_065244609.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  INP98_RS03760 (INP98_03755) - 776100..776471 (-) 372 WP_005698122.1 DUF305 domain-containing protein -
  INP98_RS03765 (INP98_03760) rdgB 776603..777202 (+) 600 WP_197570382.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  INP98_RS03770 (INP98_03765) - 777241..777558 (+) 318 WP_005695251.1 heavy metal-binding domain-containing protein -
  INP98_RS03775 (INP98_03770) comE1/comEA 777704..778066 (+) 363 WP_197570383.1 helix-hairpin-helix domain-containing protein Machinery gene
  INP98_RS03780 (INP98_03775) focA 778280..779134 (+) 855 WP_197570384.1 formate transporter FocA -
  INP98_RS03785 (INP98_03780) pflB 779190..781502 (+) 2313 WP_197570385.1 formate C-acetyltransferase -
  INP98_RS03790 (INP98_03785) pflA 781633..782373 (+) 741 WP_111387194.1 pyruvate formate lyase 1-activating protein -
  INP98_RS03795 (INP98_03790) - 782426..782929 (+) 504 WP_197570386.1 surface-adhesin E family protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13126.07 Da        Isoelectric Point: 9.6912

>NTDB_id=492952 INP98_RS03775 WP_197570383.1 777704..778066(+) (comE1/comEA) [Haemophilus parainfluenzae strain M1C149_1]
MKLMKHLFSSLFIAGAMLSTQAIAEEKTAEQAQPQMQVQQQTAVQAPSQTVQQTVSDKLNINTASASDIQKALIGIGAKK
AEAIVQYREKHGNFTVAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=492952 INP98_RS03775 WP_197570383.1 777704..778066(+) (comE1/comEA) [Haemophilus parainfluenzae strain M1C149_1]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTATTGCAGGTGCGATGTTGAGTACACAAGCAATTGCAGAAGAAAA
GACAGCAGAGCAGGCTCAACCGCAAATGCAAGTGCAGCAACAAACTGCGGTACAAGCACCATCACAAACTGTACAACAAA
CGGTGAGTGATAAATTAAATATCAATACTGCTAGCGCATCAGACATTCAAAAAGCACTGATTGGTATTGGGGCGAAAAAA
GCAGAAGCCATTGTGCAATATCGTGAGAAACACGGCAATTTTACTGTGGCAGAACAATTACTTGAAGTACAAGGTATTGG
TAAAGCTACGCTAGAGAAAAACCGAGATCGTATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

64.103

97.5

0.625
  comEA/comE1 Glaesserella parasuis strain SC1401

51.695

98.333

0.508