Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A0083_RS04980 Genome accession   NZ_CP063089
Coordinates   992598..993365 (-) Length   255 a.a.
NCBI ID   WP_197552555.1    Uniprot ID   -
Organism   Campylobacter sp. 2014D-0216     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 987598..998365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0083_RS04955 (A0083_04955) flhA 988142..990301 (-) 2160 WP_043019925.1 flagellar biosynthesis protein FlhA -
  A0083_RS04960 (A0083_04960) - 990294..990698 (-) 405 WP_043019926.1 Rrf2 family transcriptional regulator -
  A0083_RS04965 (A0083_04965) rpsO 990877..991149 (+) 273 WP_039618506.1 30S ribosomal protein S15 -
  A0083_RS04970 (A0083_04970) - 991335..992228 (-) 894 WP_197552553.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  A0083_RS04975 (A0083_04975) ruvX 992215..992601 (-) 387 WP_120759223.1 Holliday junction resolvase RuvX -
  A0083_RS04980 (A0083_04980) dprA 992598..993365 (-) 768 WP_197552555.1 DNA-processing protein DprA Machinery gene
  A0083_RS04985 (A0083_04985) - 993352..994428 (-) 1077 WP_197552557.1 divergent polysaccharide deacetylase family protein -
  A0083_RS04990 (A0083_04990) ilvC 994430..995452 (-) 1023 WP_197552559.1 ketol-acid reductoisomerase -
  A0083_RS04995 (A0083_04995) - 995562..997502 (+) 1941 WP_197552561.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28662.26 Da        Isoelectric Point: 7.2866

>NTDB_id=492841 A0083_RS04980 WP_197552555.1 992598..993365(-) (dprA) [Campylobacter sp. 2014D-0216]
MKFIDHLEAFDELLNPPARVYYKGNLKLLESRKVAIIGSRRMSVYTKNSLVELVSFLKKAKVCVVSGGALGVDIHAARLA
YPHTIAIFANGLDEIYPKANASDILDIYNNALALSENAPDYKAKPYDFLLRNRLIIALSEVVVIAQADLKSGSMQSARLA
LSMNKPIYVLPHRKNESEGTNLLLAQNKAKLLYDYQQFAAMFGELECKQQQDDLLNFIKNEDDLEKVLQKFGDKVYEYEL
EGLVEISGVKIRVCI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=492841 A0083_RS04980 WP_197552555.1 992598..993365(-) (dprA) [Campylobacter sp. 2014D-0216]
ATGAAATTTATTGACCATCTTGAAGCTTTTGATGAGCTTTTAAATCCTCCTGCTAGGGTGTATTATAAGGGGAATTTGAA
GCTTTTAGAATCTAGGAAAGTTGCAATTATTGGTTCTAGAAGAATGAGTGTTTATACTAAAAACTCTCTTGTGGAGCTTG
TGTCGTTTTTAAAAAAAGCTAAAGTTTGTGTGGTAAGTGGTGGAGCTTTGGGTGTAGATATTCACGCTGCAAGATTGGCT
TATCCGCATACTATAGCGATCTTTGCAAATGGTTTAGATGAAATTTATCCCAAAGCTAATGCAAGTGATATTTTGGATAT
TTATAACAATGCTTTAGCATTGAGTGAAAATGCACCAGATTATAAAGCTAAGCCTTATGATTTTTTACTGCGAAATAGAC
TAATCATTGCTTTAAGCGAAGTGGTAGTGATCGCACAGGCTGATTTAAAAAGTGGTTCTATGCAAAGTGCAAGACTTGCT
TTAAGTATGAATAAACCCATTTATGTGCTTCCTCATAGAAAAAATGAAAGCGAAGGGACTAATTTGCTTTTGGCTCAAAA
TAAAGCTAAATTGCTTTATGATTATCAGCAATTTGCAGCGATGTTTGGAGAGCTTGAGTGTAAACAGCAACAAGATGACT
TGTTAAATTTTATAAAAAACGAAGATGATTTAGAGAAAGTTTTGCAAAAATTTGGCGATAAAGTTTATGAATATGAGCTT
GAAGGTTTAGTGGAAATTTCTGGAGTAAAAATAAGAGTTTGTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.438

97.647

0.58
  dprA Helicobacter pylori 26695

45.679

95.294

0.435