Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IMC75_RS00030 Genome accession   NZ_CP063079
Coordinates   4295..5062 (-) Length   255 a.a.
NCBI ID   WP_044598897.1    Uniprot ID   -
Organism   Campylobacter peloridis strain 2016D-0074     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1..10062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMC75_RS00010 (IMC75_00010) - 1985..2388 (-) 404 Protein_1 Rrf2 family transcriptional regulator -
  IMC75_RS00015 (IMC75_00015) rpsO 2563..2835 (+) 273 WP_044598895.1 30S ribosomal protein S15 -
  IMC75_RS00020 (IMC75_00020) - 3032..3925 (-) 894 WP_148308775.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  IMC75_RS00025 (IMC75_00025) ruvX 3912..4298 (-) 387 WP_044598896.1 Holliday junction resolvase RuvX -
  IMC75_RS00030 (IMC75_00030) dprA 4295..5062 (-) 768 WP_044598897.1 DNA-processing protein DprA Machinery gene
  IMC75_RS00035 (IMC75_00035) - 5049..6131 (-) 1083 WP_049984589.1 divergent polysaccharide deacetylase family protein -
  IMC75_RS00040 (IMC75_00040) ilvC 6133..7155 (-) 1023 WP_044598899.1 ketol-acid reductoisomerase -
  IMC75_RS00045 (IMC75_00045) - 7264..9204 (+) 1941 WP_044598900.1 VacB/RNase II family 3'-5' exoribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28779.33 Da        Isoelectric Point: 8.4048

>NTDB_id=492786 IMC75_RS00030 WP_044598897.1 4295..5062(-) (dprA) [Campylobacter peloridis strain 2016D-0074]
MKFIDNICEFKDLLNPPSKIYYKGNLNLLNSRKIAIIGSRKMSMYTKNCISELVSWLKKANVCIVSGGALGVDITAARAA
FPHTIAVFANGLDEIYPKANKKDIEDIYKNALALSENESNYKAKPYDFLLRNRLIIALSEVVVIAQADLKSGSLQSARIA
LSMNKPIYVFAQRRNESEGTNLLLAQNKAKLIYDYKEFASMFGEIKQEQNQDEIINFLKQSDDLEKALEKFGDKIYEYEL
EGLVEISGVKIRPCL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=492786 IMC75_RS00030 WP_044598897.1 4295..5062(-) (dprA) [Campylobacter peloridis strain 2016D-0074]
ATGAAATTTATTGATAATATTTGCGAATTTAAAGATCTTTTAAATCCTCCTTCTAAGATTTATTACAAAGGAAACTTAAA
TTTATTAAATTCAAGAAAAATAGCCATTATCGGTTCAAGAAAAATGAGTATGTATACTAAAAATTGTATCAGTGAACTTG
TTTCTTGGCTTAAAAAAGCTAATGTTTGTATAGTAAGTGGAGGAGCTTTGGGGGTGGATATTACTGCTGCTAGGGCAGCC
TTTCCGCATACTATAGCTGTTTTTGCCAATGGACTTGATGAAATTTATCCTAAGGCAAATAAAAAAGATATAGAAGATAT
TTATAAAAATGCACTAGCTTTAAGTGAGAATGAGTCAAATTATAAAGCCAAACCTTATGATTTTTTATTAAGAAATAGAT
TAATTATTGCTCTAAGTGAAGTTGTAGTGATAGCGCAAGCTGATTTAAAAAGTGGTTCATTGCAAAGTGCAAGAATTGCT
TTGAGTATGAATAAACCTATTTATGTTTTTGCTCAAAGAAGAAATGAAAGTGAGGGGACAAATTTGCTTTTAGCACAAAA
TAAAGCAAAATTGATTTATGATTATAAAGAATTTGCGTCAATGTTTGGGGAGATTAAACAAGAGCAAAATCAAGATGAAA
TTATAAATTTTTTAAAACAAAGTGATGATTTAGAAAAAGCTTTGGAAAAATTTGGTGATAAAATTTATGAGTATGAGCTT
GAAGGTTTGGTTGAAATTTCGGGTGTAAAAATAAGGCCTTGCCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

90.98

0.569
  dprA Helicobacter pylori 26695

44.082

96.078

0.424