Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   IHV77_RS01285 Genome accession   NZ_CP063056
Coordinates   257499..258014 (-) Length   171 a.a.
NCBI ID   WP_194812367.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 252499..263014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS01270 (IHV77_01270) comQ 255830..256117 (-) 288 WP_228550049.1 DUF5374 domain-containing protein Machinery gene
  IHV77_RS01275 (IHV77_01275) comP 256110..256793 (-) 684 WP_194813186.1 DUF2572 family protein Machinery gene
  IHV77_RS01280 (IHV77_01280) comO 256790..257494 (-) 705 WP_194813187.1 type II secretion system protein J Machinery gene
  IHV77_RS01285 (IHV77_01285) comN 257499..258014 (-) 516 WP_194812367.1 type II secretion system protein Machinery gene
  IHV77_RS01290 (IHV77_01290) suhB 258212..259015 (+) 804 WP_194812368.1 inositol-1-monophosphatase -
  IHV77_RS01295 (IHV77_01295) - 259139..260032 (+) 894 WP_194812369.1 Fe(3+) dicitrate ABC transporter substrate-binding protein -
  IHV77_RS01300 (IHV77_01300) fecC 260032..261024 (+) 993 WP_194812370.1 iron-dicitrate ABC transporter permease FecC -
  IHV77_RS01305 (IHV77_01305) fecD 261069..262004 (+) 936 WP_408635289.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -
  IHV77_RS01310 (IHV77_01310) fecE 262004..262771 (+) 768 WP_194812372.1 Fe(3+) dicitrate ABC transporter ATP-binding protein FecE -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19545.70 Da        Isoelectric Point: 8.7202

>NTDB_id=492590 IHV77_RS01285 WP_194812367.1 257499..258014(-) (comN) [Rodentibacter haemolyticus strain DSM 111151]
MRKGATLIELLISLAIISIALSITAPLWQRDDNKMILAKEQHRLYLFLRQIQARAESSSEIWFILANRNPATQQWCMTAQ
VKNDKLCDCLQPTNCPKEVYAHFYYPYFTEKTMIVSPKIYPIEVARFNGVRNTIDSNCFLLQAGEERTLFSFFNVGSLKL
KPNQSASACTG

Nucleotide


Download         Length: 516 bp        

>NTDB_id=492590 IHV77_RS01285 WP_194812367.1 257499..258014(-) (comN) [Rodentibacter haemolyticus strain DSM 111151]
ATGCGGAAAGGGGCAACATTAATCGAATTATTAATTAGTTTGGCAATTATCAGCATTGCCTTGAGCATTACTGCGCCTCT
TTGGCAAAGGGATGATAACAAAATGATTTTAGCGAAAGAGCAACATCGCCTCTATTTATTCCTACGGCAAATTCAAGCAA
GGGCTGAAAGTTCTTCTGAAATTTGGTTTATTTTGGCAAATCGTAATCCTGCAACACAGCAATGGTGTATGACCGCCCAA
GTGAAAAATGACAAACTTTGTGACTGTTTGCAGCCGACAAATTGCCCAAAAGAAGTTTACGCACATTTTTATTATCCTTA
CTTTACGGAGAAAACGATGATTGTGAGCCCCAAGATTTATCCTATAGAGGTAGCCCGTTTTAACGGTGTTCGTAACACCA
TTGATTCCAACTGTTTCTTATTACAAGCAGGTGAAGAAAGAACCCTGTTTTCCTTTTTTAATGTTGGCAGTTTGAAATTG
AAACCGAATCAATCCGCCAGTGCTTGTACCGGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

72.189

98.83

0.713