Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   IHV77_RS01280 Genome accession   NZ_CP063056
Coordinates   256790..257494 (-) Length   234 a.a.
NCBI ID   WP_194813187.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 251790..262494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS01260 (IHV77_01260) nrdR 251880..252329 (-) 450 WP_194812365.1 transcriptional regulator NrdR -
  IHV77_RS01265 (IHV77_01265) recC 252388..255786 (-) 3399 WP_194812366.1 exodeoxyribonuclease V subunit gamma -
  IHV77_RS01270 (IHV77_01270) comQ 255830..256117 (-) 288 WP_228550049.1 DUF5374 domain-containing protein Machinery gene
  IHV77_RS01275 (IHV77_01275) comP 256110..256793 (-) 684 WP_194813186.1 DUF2572 family protein Machinery gene
  IHV77_RS01280 (IHV77_01280) comO 256790..257494 (-) 705 WP_194813187.1 type II secretion system protein J Machinery gene
  IHV77_RS01285 (IHV77_01285) comN 257499..258014 (-) 516 WP_194812367.1 type II secretion system protein Machinery gene
  IHV77_RS01290 (IHV77_01290) suhB 258212..259015 (+) 804 WP_194812368.1 inositol-1-monophosphatase -
  IHV77_RS01295 (IHV77_01295) - 259139..260032 (+) 894 WP_194812369.1 Fe(3+) dicitrate ABC transporter substrate-binding protein -
  IHV77_RS01300 (IHV77_01300) fecC 260032..261024 (+) 993 WP_194812370.1 iron-dicitrate ABC transporter permease FecC -
  IHV77_RS01305 (IHV77_01305) fecD 261069..262004 (+) 936 WP_408635289.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26332.26 Da        Isoelectric Point: 7.4613

>NTDB_id=492589 IHV77_RS01280 WP_194813187.1 256790..257494(-) (comO) [Rodentibacter haemolyticus strain DSM 111151]
MLKGQTLLSLMISLAISTALLFVISQFYADTQIQNRKVFLRLKLQAEIQRTLQLIGKDLRRVGFRALNDKLIESNLDLFE
LDEKGSALVISQADNAAQNSCVLFFYDLNANGCIGEKYTKNTCINGDQNVAKSIEKELFGYKLNGKMIETKQTYKSAIKT
NCKSDECQKALQQSACNAGGGWTDLLDEKEYEITRLQFNPLAEGKGIEIRLGGSLRNYPEIYYETAMVVALWNQ

Nucleotide


Download         Length: 705 bp        

>NTDB_id=492589 IHV77_RS01280 WP_194813187.1 256790..257494(-) (comO) [Rodentibacter haemolyticus strain DSM 111151]
ATGTTAAAAGGGCAAACTTTACTTAGTCTAATGATTTCATTGGCAATTTCCACCGCACTTTTATTCGTGATTTCACAGTT
TTATGCGGATACGCAAATTCAAAATCGAAAAGTCTTTTTACGTTTAAAACTACAGGCGGAAATTCAACGCACGCTCCAAC
TTATCGGTAAAGATCTGCGCCGTGTCGGCTTTCGGGCTCTCAACGATAAATTAATTGAAAGTAATCTGGATTTGTTTGAA
TTAGATGAAAAGGGAAGCGCTTTGGTGATTTCTCAGGCGGATAATGCAGCTCAAAATAGCTGCGTTTTGTTTTTTTATGA
TCTGAATGCAAACGGTTGTATTGGTGAAAAATACACTAAAAATACTTGTATCAATGGCGATCAAAATGTCGCAAAAAGTA
TCGAAAAAGAACTTTTCGGTTATAAATTGAATGGCAAAATGATCGAAACCAAACAAACTTACAAAAGTGCGATTAAGACG
AATTGCAAATCCGATGAATGCCAAAAAGCACTTCAACAAAGTGCTTGCAATGCCGGTGGAGGTTGGACTGATTTATTGGA
TGAAAAGGAATATGAAATAACCCGCTTGCAATTTAATCCTTTAGCCGAAGGAAAGGGGATTGAAATCCGGCTTGGCGGTA
GTTTAAGAAATTATCCTGAGATTTATTATGAAACCGCTATGGTGGTGGCGCTATGGAATCAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

66.239

100

0.662