Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IL989_RS11365 Genome accession   NZ_CP062984
Coordinates   2348026..2349756 (-) Length   576 a.a.
NCBI ID   WP_193350415.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2343026..2354756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS11340 (IL989_11340) - 2343393..2343605 (+) 213 WP_014470647.1 spore germination protein -
  IL989_RS11345 (IL989_11345) - 2343730..2343942 (+) 213 WP_013352823.1 spore germination protein -
  IL989_RS11350 (IL989_11350) alr 2344128..2345309 (+) 1182 WP_193350413.1 alanine racemase -
  IL989_RS11355 (IL989_11355) spo0A 2345500..2346300 (-) 801 WP_045510705.1 sporulation transcription factor Spo0A Regulator
  IL989_RS11360 (IL989_11360) spoIVB 2346581..2347861 (-) 1281 WP_193350414.1 SpoIVB peptidase -
  IL989_RS11365 (IL989_11365) recN 2348026..2349756 (-) 1731 WP_193350415.1 DNA repair protein RecN Machinery gene
  IL989_RS11370 (IL989_11370) ahrC 2349788..2350237 (-) 450 WP_193350416.1 transcriptional regulator AhrC/ArgR -
  IL989_RS11375 (IL989_11375) - 2350334..2351179 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -
  IL989_RS11380 (IL989_11380) dxs 2351176..2353077 (-) 1902 WP_045510685.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IL989_RS11385 (IL989_11385) - 2353220..2354110 (-) 891 WP_065981859.1 polyprenyl synthetase family protein -
  IL989_RS11390 (IL989_11390) - 2354100..2354354 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64030.95 Da        Isoelectric Point: 4.7614

>NTDB_id=492251 IL989_RS11365 WP_193350415.1 2348026..2349756(-) (recN) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYREGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLETLKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSAGEAPIVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDIGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKELKDGRTTTHVTPLSQQDKVAEIGRMIAGVEVTDLTKR
HAKELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=492251 IL989_RS11365 WP_193350415.1 2348026..2349756(-) (recN) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTAGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGATGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATCGCGGCTTTAAGGGAGATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAGCATTTAGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAG
GCTTACCGTGAAGGGTATGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAGAGCGAGCAGGAAATGGC
ACATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCGGCTAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AGGAAGAACGGAAGCAAATATCCAACTTTGAGAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGTCTCGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCGACCTTTCAGATGCGCAATCTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGATATTCTGGAATACGGCTCAAAGATAGAAGAGGAAATTGATCAAATCGAGAACCGTGACAGCCACCTTGAAACGCT
GAAGAAGGAACTGGAGTCTGTCGGCAAAGATGTGGCTGTAGAAGCAGCCAACTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAACTGGCTGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCTACGTTTGATACGGAATTCCTCGTG
AAGACCGATCCGTCAGCCGGTGAAGCGCCGATTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGTATTGACCTTGT
GAAATTTTTAATTTCAACAAATACCGGGGAGCCGCTCAAGCCGCTGTCAAAGGTTGCGTCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGATAAAAAGTATTTTTTCTTCCCAGCAGGATGTCACTTCCATCATCTTTGACGAAGTGGACATCGGTGTA
AGCGGGCGGGTTGCGCAGGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACATCT
CCCGCAGGTTGCCGCGATGGCGGACACGCACCTTTTGATCGCGAAAGAATTAAAAGACGGCCGAACGACAACGCATGTCA
CGCCGCTTTCCCAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACAGATCTGACAAAACGG
CATGCAAAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.062

100

0.891