Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IL989_RS11355 Genome accession   NZ_CP062984
Coordinates   2345500..2346300 (-) Length   266 a.a.
NCBI ID   WP_045510705.1    Uniprot ID   A0AAP7TAW5
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2340500..2351300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS11325 (IL989_11325) - 2340992..2341624 (+) 633 WP_193350412.1 helix-turn-helix domain-containing protein -
  IL989_RS11330 (IL989_11330) - 2341917..2342054 (+) 138 WP_014470646.1 hypothetical protein -
  IL989_RS11335 (IL989_11335) - 2342148..2343266 (+) 1119 WP_193351925.1 NADH-dependent flavin oxidoreductase -
  IL989_RS11340 (IL989_11340) - 2343393..2343605 (+) 213 WP_014470647.1 spore germination protein -
  IL989_RS11345 (IL989_11345) - 2343730..2343942 (+) 213 WP_013352823.1 spore germination protein -
  IL989_RS11350 (IL989_11350) alr 2344128..2345309 (+) 1182 WP_193350413.1 alanine racemase -
  IL989_RS11355 (IL989_11355) spo0A 2345500..2346300 (-) 801 WP_045510705.1 sporulation transcription factor Spo0A Regulator
  IL989_RS11360 (IL989_11360) spoIVB 2346581..2347861 (-) 1281 WP_193350414.1 SpoIVB peptidase -
  IL989_RS11365 (IL989_11365) recN 2348026..2349756 (-) 1731 WP_193350415.1 DNA repair protein RecN Machinery gene
  IL989_RS11370 (IL989_11370) ahrC 2349788..2350237 (-) 450 WP_193350416.1 transcriptional regulator AhrC/ArgR -
  IL989_RS11375 (IL989_11375) - 2350334..2351179 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29572.07 Da        Isoelectric Point: 6.3903

>NTDB_id=492250 IL989_RS11355 WP_045510705.1 2345500..2346300(-) (spo0A) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELAKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=492250 IL989_RS11355 WP_045510705.1 2345500..2346300(-) (spo0A) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTTTCTTTGTTTAAAGATAAAAATCCCGATGTGCTCG
TTTTAGACATTATTATGCCGCATCTGGACGGTCTTGCGGTTTTGGAGCGCCTCCGGGAATCAGAACTTGCGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGTGCGTCTTATTTCATTCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGCAATGTCAGCAGCGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATCATCCGCAGTCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTACTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCATGCCATTGAAGTTGCATGGAGCAGGGGAAATATTGACTCCATTTCTTCGCTGTTCGGGTATACTGTGAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCATA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97