Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IL989_RS01730 Genome accession   NZ_CP062984
Coordinates   321950..322387 (-) Length   145 a.a.
NCBI ID   WP_013350968.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 316950..327387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS01705 (IL989_01705) - 317968..319104 (+) 1137 Protein_297 zinc-dependent alcohol dehydrogenase -
  IL989_RS01710 (IL989_01710) - 319119..319553 (+) 435 WP_013350964.1 RDD family protein -
  IL989_RS01715 (IL989_01715) - 319626..319949 (+) 324 WP_193351274.1 YckD family protein -
  IL989_RS01720 (IL989_01720) - 320054..321490 (+) 1437 WP_193351275.1 glycoside hydrolase family 1 protein -
  IL989_RS01725 (IL989_01725) nin/comJ 321531..321929 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  IL989_RS01730 (IL989_01730) nucA/comI 321950..322387 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IL989_RS01735 (IL989_01735) hxlB 322737..323294 (-) 558 WP_193351276.1 6-phospho-3-hexuloisomerase -
  IL989_RS01740 (IL989_01740) hxlA 323291..323926 (-) 636 WP_045508592.1 3-hexulose-6-phosphate synthase -
  IL989_RS01745 (IL989_01745) - 324158..324520 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=492220 IL989_RS01730 WP_013350968.1 321950..322387(-) (nucA/comI) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=492220 IL989_RS01730 WP_013350968.1 321950..322387(-) (nucA/comI) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAACAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641