Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   IL989_RS01725 Genome accession   NZ_CP062984
Coordinates   321531..321929 (-) Length   132 a.a.
NCBI ID   WP_013350967.1    Uniprot ID   A0A9P1JDU7
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 316531..326929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS01700 (IL989_01700) - 316702..317904 (+) 1203 WP_193351273.1 GTP-binding protein -
  IL989_RS01705 (IL989_01705) - 317968..319104 (+) 1137 Protein_297 zinc-dependent alcohol dehydrogenase -
  IL989_RS01710 (IL989_01710) - 319119..319553 (+) 435 WP_013350964.1 RDD family protein -
  IL989_RS01715 (IL989_01715) - 319626..319949 (+) 324 WP_193351274.1 YckD family protein -
  IL989_RS01720 (IL989_01720) - 320054..321490 (+) 1437 WP_193351275.1 glycoside hydrolase family 1 protein -
  IL989_RS01725 (IL989_01725) nin/comJ 321531..321929 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  IL989_RS01730 (IL989_01730) nucA/comI 321950..322387 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IL989_RS01735 (IL989_01735) hxlB 322737..323294 (-) 558 WP_193351276.1 6-phospho-3-hexuloisomerase -
  IL989_RS01740 (IL989_01740) hxlA 323291..323926 (-) 636 WP_045508592.1 3-hexulose-6-phosphate synthase -
  IL989_RS01745 (IL989_01745) - 324158..324520 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14942.92 Da        Isoelectric Point: 4.4508

>NTDB_id=492219 IL989_RS01725 WP_013350967.1 321531..321929(-) (nin/comJ) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADDAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=492219 IL989_RS01725 WP_013350967.1 321531..321929(-) (nin/comJ) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATACGAAGGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGACGGGATTGAAATTGAAAGCGTGATGTCAAAAAGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATTGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765