Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   H4O27_RS12010 Genome accession   NZ_CP062976
Coordinates   2463508..2464215 (-) Length   235 a.a.
NCBI ID   WP_165010016.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2458508..2469215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS11995 - 2458586..2461063 (-) 2478 WP_193004279.1 LPS-assembly protein LptD -
  H4O27_RS12000 amgK 2461134..2462138 (+) 1005 WP_165010011.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  H4O27_RS12005 - 2462346..2463440 (+) 1095 WP_206224764.1 acyltransferase family protein -
  H4O27_RS12010 dsbA1 2463508..2464215 (-) 708 WP_165010016.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  H4O27_RS12015 murJ 2464497..2466035 (+) 1539 WP_165010018.1 murein biosynthesis integral membrane protein MurJ -
  H4O27_RS12020 trpC 2466100..2466882 (-) 783 WP_165010020.1 indole-3-glycerol phosphate synthase TrpC -
  H4O27_RS12025 - 2466950..2467555 (-) 606 WP_165010022.1 trimeric intracellular cation channel family protein -
  H4O27_RS12030 - 2467654..2468610 (-) 957 WP_165010024.1 YheT family hydrolase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25410.01 Da        Isoelectric Point: 5.3586

>NTDB_id=492198 H4O27_RS12010 WP_165010016.1 2463508..2464215(-) (dsbA1) [Neisseria yangbaofengii strain ZJ785]
MNLKKTILTTFTALALAACGGQAETSVPAEGSAQNTASAPAPVAPAGLAEGRNYTVLANPIPQLQAGKVEVVEFFGYFCP
HCAHLEPVLSEHAKSFRDDTYLRKEHVVWGPEMKPLARLAAAVQIAGEKAADMPIFNAIVNEKTNLADVNVLKTWLPEQT
AFDGKKVLAAFESPESQARADKMEELTNTFQISSTPVVIVGGKYQVQFKDWQSGMNTVDLLVEKVREEQKAAPAQ

Nucleotide


Download         Length: 708 bp        

>NTDB_id=492198 H4O27_RS12010 WP_165010016.1 2463508..2464215(-) (dsbA1) [Neisseria yangbaofengii strain ZJ785]
ATGAACCTGAAAAAAACTATCCTTACCACATTCACGGCTCTGGCCTTGGCAGCTTGCGGCGGCCAAGCCGAAACCAGTGT
GCCTGCCGAAGGCTCTGCGCAAAACACCGCTTCCGCACCGGCACCGGTTGCCCCTGCCGGTTTGGCAGAAGGCCGGAACT
ACACCGTATTGGCCAATCCGATTCCGCAATTGCAAGCCGGCAAAGTCGAAGTGGTCGAATTTTTCGGCTATTTCTGCCCG
CATTGCGCCCACTTGGAGCCGGTATTGAGCGAGCATGCCAAATCGTTCCGAGACGATACCTACCTGCGTAAAGAACACGT
GGTTTGGGGCCCTGAAATGAAGCCGTTGGCGCGCTTGGCCGCCGCCGTGCAAATCGCCGGTGAAAAAGCCGCCGATATGC
CGATTTTCAACGCCATCGTCAACGAAAAAACCAACTTGGCCGATGTGAATGTATTGAAAACATGGCTGCCGGAACAAACC
GCGTTCGACGGCAAAAAAGTCTTGGCGGCATTTGAATCGCCCGAAAGCCAAGCCCGTGCCGATAAAATGGAAGAATTAAC
CAATACCTTCCAAATCAGCAGCACGCCGGTGGTGATTGTCGGCGGCAAATACCAAGTGCAGTTTAAAGATTGGCAATCGG
GTATGAACACCGTTGACTTGCTGGTGGAAAAAGTACGCGAAGAGCAAAAAGCCGCGCCTGCGCAATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(68-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

69.82

94.468

0.66
  dsbA2 Neisseria meningitidis MC58

72.3

90.638

0.655