Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   H4O27_RS07575 Genome accession   NZ_CP062976
Coordinates   1552674..1553261 (+) Length   195 a.a.
NCBI ID   WP_165008900.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1547674..1558261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS07550 - 1548165..1548746 (-) 582 WP_165008894.1 superoxide dismutase -
  H4O27_RS07555 dnaB 1548915..1550321 (+) 1407 WP_165008896.1 replicative DNA helicase -
  H4O27_RS07560 pilH 1550482..1551144 (+) 663 WP_165008898.1 GspH/FimT family pseudopilin Machinery gene
  H4O27_RS07565 pilV 1551149..1551778 (+) 630 WP_193004229.1 type IV pilus modification protein PilV Machinery gene
  H4O27_RS07570 - 1551781..1552695 (+) 915 WP_193004231.1 PilW family protein -
  H4O27_RS07575 pilK 1552674..1553261 (+) 588 WP_165008900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H4O27_RS07580 - 1553263..1553700 (+) 438 WP_165008902.1 type IV pilin protein -
  H4O27_RS07585 - 1553901..1554473 (-) 573 WP_165008904.1 50S ribosomal protein L25/general stress protein Ctc -
  H4O27_RS07590 - 1554540..1555529 (-) 990 WP_193004233.1 ribose-phosphate pyrophosphokinase -
  H4O27_RS07610 ispE 1555974..1556819 (-) 846 WP_165008908.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  H4O27_RS07615 lolB 1556829..1557413 (-) 585 WP_165008958.1 lipoprotein insertase outer membrane protein LolB -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21447.50 Da        Isoelectric Point: 6.9543

>NTDB_id=492187 H4O27_RS07575 WP_165008900.1 1552674..1553261(+) (pilK) [Neisseria yangbaofengii strain ZJ785]
MRKSRYLNNFAPQSAQHGYALFIVLMIMIVIALLVVTAVQSYNTEQRISTNEADRKLALSLAEAALQKGEDKILEFDGKK
VTFKANCLGMIGNKETKGLCATPDAMVPTGSSNAIEVESSTGNAWERMADKKLYIDENGQPVDIQAENVSKTPVYIIEYI
STNPSQGSTIYRVTAKAWGKNNNTVVMLQSYVANE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=492187 H4O27_RS07575 WP_165008900.1 1552674..1553261(+) (pilK) [Neisseria yangbaofengii strain ZJ785]
ATGCGCAAATCACGCTATTTAAATAATTTTGCACCCCAGTCTGCTCAGCATGGCTATGCACTCTTCATCGTGTTGATGAT
TATGATCGTTATTGCACTGCTGGTAGTAACGGCGGTGCAATCATATAATACTGAACAACGAATCAGTACCAATGAAGCAG
ATAGAAAATTAGCACTTAGCTTGGCTGAAGCAGCTTTACAAAAAGGCGAAGACAAAATTCTAGAGTTTGACGGTAAAAAA
GTTACTTTTAAAGCTAATTGTCTTGGCATGATTGGTAACAAAGAAACAAAAGGTCTCTGCGCAACACCTGATGCTATGGT
TCCAACAGGAAGTAGCAATGCGATAGAAGTAGAAAGCTCGACAGGCAATGCATGGGAACGCATGGCTGACAAAAAACTGT
ATATTGACGAAAACGGCCAACCCGTCGATATTCAAGCTGAAAATGTCAGCAAAACACCTGTGTATATCATAGAATACATC
AGCACTAATCCTTCTCAAGGCAGCACCATTTACCGTGTAACTGCCAAAGCATGGGGTAAAAACAATAATACTGTCGTTAT
GCTTCAGTCTTACGTAGCGAATGAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(18-66)

Type IV pilus assembly protein PilX C-term (PilX)

(97-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

49.763

100

0.538