Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   H4O27_RS07560 Genome accession   NZ_CP062976
Coordinates   1550482..1551144 (+) Length   220 a.a.
NCBI ID   WP_165008898.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1545482..1556144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS13120 - 1546618..1546833 (+) 216 WP_226883381.1 aquaporin -
  H4O27_RS07540 - 1547247..1547585 (+) 339 WP_165008892.1 general secretion pathway protein GspG -
  H4O27_RS13460 - 1547585..1548007 (+) 423 WP_308806037.1 NF038104 family lipoprotein -
  H4O27_RS07550 - 1548165..1548746 (-) 582 WP_165008894.1 superoxide dismutase -
  H4O27_RS07555 dnaB 1548915..1550321 (+) 1407 WP_165008896.1 replicative DNA helicase -
  H4O27_RS07560 pilH 1550482..1551144 (+) 663 WP_165008898.1 GspH/FimT family pseudopilin Machinery gene
  H4O27_RS07565 pilV 1551149..1551778 (+) 630 WP_193004229.1 type IV pilus modification protein PilV Machinery gene
  H4O27_RS07570 - 1551781..1552695 (+) 915 WP_193004231.1 PilW family protein -
  H4O27_RS07575 pilK 1552674..1553261 (+) 588 WP_165008900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H4O27_RS07580 - 1553263..1553700 (+) 438 WP_165008902.1 type IV pilin protein -
  H4O27_RS07585 - 1553901..1554473 (-) 573 WP_165008904.1 50S ribosomal protein L25/general stress protein Ctc -
  H4O27_RS07590 - 1554540..1555529 (-) 990 WP_193004233.1 ribose-phosphate pyrophosphokinase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24464.73 Da        Isoelectric Point: 9.5679

>NTDB_id=492185 H4O27_RS07560 WP_165008898.1 1550482..1551144(+) (pilH) [Neisseria yangbaofengii strain ZJ785]
MHAKQQGFTLIELLVVIAIIAIMAVIALPNMSQWIASRRVASNAEQIANLLRFARSEAVRLNLPVYICPVQIKKDGKSNG
SCNASFSNQGLMAFADADKNKQYERANDIQLRAIILNSKNNDRVTHSYYTYPFSGSKTSDNITRWTFLPNGNFVRWNKSP
SATDNFPTPSGYTQIILTDSRASSDDDKKARAGVLFIDGSGRVEICAKSDSRDICQYSEK

Nucleotide


Download         Length: 663 bp        

>NTDB_id=492185 H4O27_RS07560 WP_165008898.1 1550482..1551144(+) (pilH) [Neisseria yangbaofengii strain ZJ785]
ATGCACGCCAAACAACAAGGTTTTACCCTTATCGAACTGCTGGTCGTGATTGCCATCATCGCAATCATGGCCGTCATCGC
CCTTCCCAACATGAGCCAATGGATCGCATCGCGACGCGTGGCCAGCAACGCGGAACAAATCGCCAATCTTCTGCGCTTTG
CCCGCAGCGAAGCCGTTCGCCTGAATCTTCCGGTTTATATTTGTCCGGTTCAAATTAAAAAAGACGGTAAATCTAACGGT
AGCTGTAACGCCAGTTTCAGCAACCAAGGTTTGATGGCTTTTGCCGATGCAGATAAAAACAAACAATATGAGCGCGCCAA
CGATATTCAATTACGCGCCATCATCTTAAACAGCAAAAACAACGATCGCGTAACCCATAGCTATTATACCTACCCTTTTA
GTGGCAGTAAAACCTCGGACAACATCACCCGCTGGACTTTCCTACCCAACGGCAATTTTGTCCGTTGGAATAAATCGCCT
TCTGCGACAGATAATTTCCCGACACCTAGCGGTTACACTCAAATTATCTTAACCGATTCCCGTGCAAGCAGCGATGATGA
CAAAAAAGCTCGCGCCGGTGTATTGTTTATCGATGGCAGCGGCCGTGTAGAAATCTGCGCAAAATCCGACTCGCGTGATA
TTTGCCAATATTCCGAAAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-161)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

52.995

98.636

0.523