Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H4O27_RS03895 Genome accession   NZ_CP062976
Coordinates   781249..782052 (-) Length   267 a.a.
NCBI ID   WP_165009446.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 780628..780825 781249..782052 flank 424


Gene organization within MGE regions


Location: 780628..782052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS03895 comL 781249..782052 (-) 804 WP_165009446.1 outer membrane protein assembly factor BamD Machinery gene

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31226.22 Da        Isoelectric Point: 7.9862

>NTDB_id=492175 H4O27_RS03895 WP_165009446.1 781249..782052(-) (comL) [Neisseria yangbaofengii strain ZJ785]
MKKILLLVSLSLALSACANKGTIDKDAQITQDWSVEQLYAEAQDELNSNNYTRAIKLYELLESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYHAFAQLVERYPNS
KYAPDATSRMTKLVDALGGNEIAVARYYMKRGAYVAAINRAQKIVQQYQNTRYVEESLAMMELAYKKLEKPQLAQDTRRI
LQQNFPESPFLTHEWRNGDMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=492175 H4O27_RS03895 WP_165009446.1 781249..782052(-) (comL) [Neisseria yangbaofengii strain ZJ785]
ATGAAAAAAATTCTTTTATTAGTTTCTTTAAGTTTGGCACTCAGCGCATGTGCCAATAAAGGCACCATCGATAAAGACGC
TCAAATTACTCAGGATTGGAGTGTGGAACAGCTTTATGCTGAAGCACAGGATGAATTGAACAGCAACAATTATACGCGAG
CCATCAAGTTATATGAACTGCTCGAATCACGTTTCCCTAATGGTCGCTACGCGCAGCAATCTCAATTAGACACAGCCTAC
GCATACTATAAAGATGATGAGCCTGAAAAAGCCTTGGCCGCTATCGACCGCTTCCAACGCCATCACCCGCAGCATCCGAA
CATGGATTATGCCTTATATTTAAAAGGCTTGGTATTGTTTAATGAAGATCAGTCTTTCTTAAATAAATTGGCGTCACAAG
ACTGGTCCGACCGCGACCCTAAAGCCAACCGTGATGCCTACCATGCTTTTGCACAACTGGTAGAACGCTATCCGAACAGT
AAATATGCGCCTGATGCCACTTCACGCATGACCAAATTGGTTGACGCATTGGGCGGCAACGAAATTGCAGTTGCCCGTTA
TTACATGAAACGCGGCGCATACGTTGCAGCCATTAACCGCGCACAAAAAATTGTTCAACAATACCAAAATACACGTTATG
TTGAAGAATCTTTAGCCATGATGGAACTGGCCTATAAGAAACTGGAAAAACCGCAACTGGCTCAAGATACCCGTCGTATT
TTGCAGCAAAACTTCCCGGAAAGCCCTTTCTTAACCCATGAATGGCGCAATGGCGACATGCCTTGGTGGCGTTATTGGAA
GTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

82.707

99.625

0.824
  comL Neisseria gonorrhoeae MS11

82.331

99.625

0.82