Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LPB04_RS19160 Genome accession   NZ_CP062941
Coordinates   4247880..4250225 (-) Length   781 a.a.
NCBI ID   WP_193686074.1    Uniprot ID   -
Organism   Massilia litorea strain LPB0304     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4242880..4255225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB04_RS19135 (LPB04_19135) - 4243257..4244090 (-) 834 WP_193686071.1 alpha/beta fold hydrolase -
  LPB04_RS24315 (LPB04_19140) - 4244166..4245026 (-) 861 WP_193686072.1 intradiol ring-cleavage dioxygenase -
  LPB04_RS19145 (LPB04_19145) - 4245042..4245560 (-) 519 WP_227496484.1 Spy/CpxP family protein refolding chaperone -
  LPB04_RS19150 (LPB04_19150) - 4245744..4246433 (+) 690 WP_193686073.1 response regulator transcription factor -
  LPB04_RS19155 (LPB04_19155) - 4246445..4247956 (+) 1512 WP_227496485.1 cell wall metabolism sensor histidine kinase WalK -
  LPB04_RS19160 (LPB04_19160) comA 4247880..4250225 (-) 2346 WP_193686074.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LPB04_RS19165 (LPB04_19165) - 4250255..4251985 (-) 1731 WP_193686075.1 T6SS immunity protein Tli4 family protein -
  LPB04_RS19170 (LPB04_19170) - 4251982..4253721 (-) 1740 WP_193686076.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 84209.99 Da        Isoelectric Point: 9.5461

>NTDB_id=492050 LPB04_RS19160 WP_193686074.1 4247880..4250225(-) (comA) [Massilia litorea strain LPB0304]
MRSTILGFVAGAAFLQTRAALPAAWQIAACLCASLALLLALRGPVRATVAGALAGFAWAAIVAHLTLAPRLDKADEGRDI
EIVGTVARLPHDFGQGVRFQFAVGQVMTTNAKVPPMLALSWYRAGSEALQLHPGERWRLTVRLQRPHGNANPHGFDYEAW
LLGQGIRATGYVRTAPGNRRLDAFVVTPGHLVERCRDILRARILAALEGKPYAAVIVALVVGDQRGIEQPDWDVFNRTGV
SHLVAISGLHITMVAGLAALALSFLWRRSFFTNAQLPLLLPAQKVAALSGACAALVYVLLAGFGVPAQRTLYMLAVVAAA
LWMGRLTSVTHILCLALGLVVLLDPWAVLWPGFWLSFGAVGVILYAGLGRLDESSAGWRATLALAARTQYAVTLGLVPLT
LLLFSQVSLVGPIANAFAIPVVSFVVTPLALLGSLLPAPLAGPVLWCAHRVLEWLAAALGWLATLPLAVWSAPAPPPWLF
VLALAGTGWMLAPRGWPHRWAGAAAWLPLFLLQPTHPAPGRFAVTAFDVGQGMALLVETSGHRLLYDTGPQYAPGQDAGG
RVILPYLRARGIKHLDTVVVSHSDVDHVGGALTLLEALAVDRVSSSLGEGHRVVHAARRHERCVAGQRWEWDGVVFEMLQ
PAPASYADTELKANARSCTLRIEARGRALLLAGDIEAVQEAALVSQEPDKLRADVLLAPHHGSGTSSTPAFLEAVGPSIG
IFQVGYRNRYRHPKKEVFERYGDLHIRRLRTDESGAITLDFGPQVGAEEYRRQYARYWYEP

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=492050 LPB04_RS19160 WP_193686074.1 4247880..4250225(-) (comA) [Massilia litorea strain LPB0304]
ATGCGCTCCACCATCCTCGGCTTCGTTGCCGGCGCCGCTTTCCTGCAAACGCGCGCCGCGCTCCCGGCCGCCTGGCAGAT
CGCCGCCTGCCTGTGCGCGTCCCTGGCGTTGCTGCTGGCCCTGCGCGGTCCGGTGCGCGCAACGGTCGCCGGCGCGCTGG
CCGGCTTCGCCTGGGCGGCGATCGTCGCCCACCTCACGCTCGCACCCCGGCTCGACAAGGCGGACGAAGGCCGCGACATC
GAAATCGTCGGGACTGTCGCCAGACTCCCGCACGATTTCGGCCAGGGCGTGCGCTTCCAGTTCGCGGTCGGACAGGTCAT
GACGACCAACGCGAAGGTGCCGCCGATGCTCGCCCTGTCCTGGTACCGCGCCGGGAGCGAAGCCCTGCAGCTGCACCCCG
GCGAACGCTGGCGCCTGACCGTGCGCCTGCAGCGCCCGCACGGCAATGCCAACCCGCACGGCTTCGACTACGAAGCCTGG
CTGCTGGGGCAAGGCATCCGCGCCACCGGCTACGTGCGCACAGCGCCAGGCAACCGCCGCCTCGACGCGTTCGTCGTCAC
GCCCGGCCACCTCGTCGAGCGCTGCCGCGATATCCTGCGCGCCCGCATCCTCGCGGCGCTGGAGGGCAAGCCGTATGCCG
CCGTGATCGTGGCGCTCGTCGTCGGCGACCAGCGCGGAATCGAGCAGCCGGACTGGGATGTCTTCAACCGCACCGGCGTC
AGCCACCTGGTCGCCATCTCCGGTTTGCACATCACGATGGTGGCAGGACTTGCCGCGCTGGCGCTGTCGTTTCTGTGGCG
TCGCTCATTCTTCACGAACGCGCAGCTGCCCCTGCTGCTGCCGGCGCAGAAGGTGGCAGCCCTCAGCGGCGCCTGCGCGG
CGCTGGTGTACGTGCTGCTGGCCGGCTTCGGCGTGCCGGCCCAGCGCACCCTCTACATGCTGGCGGTGGTCGCGGCGGCC
CTGTGGATGGGGCGCCTGACGAGCGTGACGCACATCCTCTGCCTTGCCCTGGGACTGGTCGTGCTGCTCGACCCCTGGGC
CGTGCTGTGGCCGGGCTTCTGGCTGTCCTTCGGCGCCGTGGGCGTGATCCTGTACGCGGGACTCGGGCGCCTGGACGAAT
CAAGCGCCGGCTGGCGGGCCACGCTGGCACTCGCGGCGCGCACTCAGTACGCGGTCACGCTCGGACTGGTGCCCCTGACG
CTGCTGCTGTTCTCGCAAGTGTCCCTCGTCGGTCCGATCGCCAATGCCTTCGCCATTCCGGTGGTGAGCTTCGTCGTCAC
GCCGCTGGCGCTCCTCGGCAGCCTGCTGCCGGCGCCCCTGGCCGGCCCGGTGCTGTGGTGCGCACACCGCGTGCTGGAAT
GGCTGGCCGCGGCGCTGGGCTGGCTGGCGACGCTGCCGCTCGCGGTCTGGAGCGCGCCGGCGCCGCCGCCCTGGCTGTTC
GTGCTGGCGCTGGCCGGCACCGGCTGGATGCTGGCCCCGCGCGGCTGGCCGCATCGCTGGGCCGGCGCGGCCGCCTGGCT
GCCGCTGTTCCTGCTGCAGCCGACGCACCCGGCGCCCGGCAGGTTTGCCGTGACCGCCTTCGACGTCGGCCAGGGCATGG
CGCTGCTGGTGGAGACGAGCGGCCACCGGCTGCTCTACGACACCGGCCCGCAGTACGCGCCCGGCCAGGATGCGGGCGGG
CGCGTGATCCTGCCCTACCTGCGCGCACGCGGCATCAAGCACCTGGACACGGTCGTCGTCTCGCACAGCGACGTCGATCA
CGTGGGCGGCGCGCTGACGCTGCTGGAGGCGCTCGCGGTCGACCGGGTGAGCAGTTCGCTGGGAGAAGGGCACCGGGTCG
TGCATGCGGCGCGCCGGCACGAGCGCTGCGTGGCGGGTCAGCGCTGGGAATGGGACGGGGTGGTCTTCGAGATGCTGCAG
CCGGCGCCCGCCAGCTATGCGGATACGGAGCTCAAGGCGAATGCGCGCAGCTGCACCTTGCGCATCGAGGCGCGGGGAAG
GGCGCTGCTGCTGGCGGGCGATATCGAAGCGGTGCAGGAAGCGGCCCTGGTCAGCCAGGAGCCGGACAAGCTGCGCGCCG
ACGTCCTGCTGGCGCCGCATCACGGCAGCGGCACCTCGTCGACGCCCGCCTTTCTGGAAGCGGTCGGGCCGTCGATCGGC
ATCTTCCAGGTCGGTTACCGCAACCGTTACCGTCATCCGAAAAAGGAGGTGTTCGAGCGCTATGGCGACCTGCACATCCG
CCGCCTGCGCACCGACGAATCGGGCGCGATCACGCTCGACTTCGGACCGCAGGTGGGCGCGGAGGAATACCGCCGCCAGT
ACGCCCGTTACTGGTACGAGCCCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(219-495)

Domain of unknown function (DUF4131) (DUF4131)

(21-174)

Metallo-beta-lactamase superfamily (Lactamase_B)

(529-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.305

100

0.506
  comA Pseudomonas stutzeri DSM 10701

39.674

94.238

0.374