Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KH969_RS08920 Genome accession   NZ_CP074701
Coordinates   1863399..1864136 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 702/18     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1858399..1869136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH969_RS08905 (KH969_08915) clpC 1858853..1861426 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KH969_RS08910 (KH969_08920) yfiH 1861556..1862287 (-) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  KH969_RS08915 (KH969_08925) rluD 1862284..1863264 (-) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KH969_RS08920 (KH969_08930) comL 1863399..1864136 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KH969_RS08925 (KH969_08935) raiA 1864407..1864748 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KH969_RS08930 (KH969_08940) pheL 1864852..1864899 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KH969_RS08935 (KH969_08945) pheA 1864998..1866158 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  KH969_RS08940 (KH969_08950) tyrA 1866201..1867322 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KH969_RS08945 (KH969_08955) aroF 1867333..1868403 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KH969_RS08950 (KH969_08960) yfiL 1868613..1868978 (+) 366 WP_001353010.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=492000 KH969_RS08920 WP_000197686.1 1863399..1864136(+) (comL) [Escherichia coli strain 702/18]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=492000 KH969_RS08920 WP_000197686.1 1863399..1864136(+) (comL) [Escherichia coli strain 702/18]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376