Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | IMO23_RS08045 | Genome accession | NZ_CP062919 |
| Coordinates | 1672223..1672603 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1667223..1677603
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMO23_RS08015 (IMO23_08015) | kdsB | 1668126..1668887 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| IMO23_RS08020 (IMO23_08020) | - | 1668899..1669879 (+) | 981 | WP_001075412.1 | DNA polymerase III subunit delta' | - |
| IMO23_RS08025 (IMO23_08025) | - | 1669891..1670232 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| IMO23_RS08030 (IMO23_08030) | - | 1670250..1671023 (+) | 774 | WP_000497302.1 | TatD family hydrolase | - |
| IMO23_RS08035 (IMO23_08035) | - | 1671061..1671669 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| IMO23_RS08040 (IMO23_08040) | - | 1671679..1672233 (+) | 555 | WP_002057406.1 | type II secretion system protein | - |
| IMO23_RS08045 (IMO23_08045) | xcpV | 1672223..1672603 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| IMO23_RS08050 (IMO23_08050) | xcpW | 1672603..1673304 (+) | 702 | WP_195707742.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| IMO23_RS08055 (IMO23_08055) | gspK | 1673304..1674263 (+) | 960 | WP_195707743.1 | type II secretion system minor pseudopilin GspK | - |
| IMO23_RS08060 (IMO23_08060) | - | 1674493..1675089 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| IMO23_RS08065 (IMO23_08065) | ung | 1675140..1675853 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| IMO23_RS08070 (IMO23_08070) | - | 1675850..1676974 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| IMO23_RS08075 (IMO23_08075) | tadA | 1676981..1677484 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=491972 IMO23_RS08045 WP_000836911.1 1672223..1672603(+) (xcpV) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=491972 IMO23_RS08045 WP_000836911.1 1672223..1672603(+) (xcpV) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |