Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CA347_RS06030 Genome accession   NC_021554
Coordinates   1241705..1242478 (+) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus CA-347     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236705..1247478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA347_RS06010 (CA347_1169) trmFO 1237048..1238355 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  CA347_RS06015 (CA347_1170) xerC 1238773..1239669 (+) 897 WP_001622394.1 tyrosine recombinase XerC -
  CA347_RS06020 (CA347_1171) hslV 1239666..1240211 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  CA347_RS06025 (CA347_1172) hslU 1240277..1241680 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  CA347_RS06030 (CA347_1173) codY 1241705..1242478 (+) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CA347_RS06035 - 1242529..1242621 (+) 93 WP_031785459.1 hypothetical protein -
  CA347_RS06040 (CA347_1174) rpsB 1242820..1243587 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  CA347_RS06045 - 1243621..1243734 (+) 114 WP_001789890.1 hypothetical protein -
  CA347_RS06050 (CA347_1175) tsf 1243769..1244650 (+) 882 WP_000201387.1 translation elongation factor Ts -
  CA347_RS06055 (CA347_1176) pyrH 1244787..1245509 (+) 723 WP_016528710.1 UMP kinase -
  CA347_RS06060 (CA347_1177) frr 1245528..1246082 (+) 555 WP_001280003.1 ribosome recycling factor -
  CA347_RS06065 (CA347_1178) - 1246454..1247224 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=49169 CA347_RS06030 WP_000055334.1 1241705..1242478(+) (codY) [Staphylococcus aureus CA-347]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=49169 CA347_RS06030 WP_000055334.1 1241705..1242478(+) (codY) [Staphylococcus aureus CA-347]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment