Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   IIE26_RS02265 Genome accession   NZ_CP062790
Coordinates   438300..439259 (+) Length   319 a.a.
NCBI ID   WP_071157530.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain YPW-V2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 433300..444259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE26_RS02245 (IIE26_02245) clpB 433456..436053 (+) 2598 WP_226280697.1 ATP-dependent chaperone ClpB -
  IIE26_RS02250 (IIE26_02250) - 436123..436314 (-) 192 WP_009331232.1 DUF2929 family protein -
  IIE26_RS02255 (IIE26_02255) - 436529..437266 (+) 738 WP_009331231.1 serine aminopeptidase domain-containing protein -
  IIE26_RS02260 (IIE26_02260) - 437348..438181 (+) 834 WP_071157531.1 hypothetical protein -
  IIE26_RS02265 (IIE26_02265) med 438300..439259 (+) 960 WP_071157530.1 BMP family ABC transporter substrate-binding protein Regulator
  IIE26_RS02270 (IIE26_02270) comZ 439286..439480 (+) 195 WP_009331228.1 ComZ family protein Regulator
  IIE26_RS02275 (IIE26_02275) - 440453..441415 (+) 963 WP_009331227.1 nuclease-related domain-containing protein -
  IIE26_RS02280 (IIE26_02280) - 441426..441809 (-) 384 WP_009331226.1 hypothetical protein -
  IIE26_RS02285 (IIE26_02285) - 442025..442957 (+) 933 WP_009331225.1 beta-ketoacyl-ACP synthase III -
  IIE26_RS02290 (IIE26_02290) fabF 443006..444244 (+) 1239 WP_009331224.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35492.13 Da        Isoelectric Point: 4.4450

>NTDB_id=491380 IIE26_RS02265 WP_071157530.1 438300..439259(+) (med) [Cytobacillus oceanisediminis strain YPW-V2]
MHKTLVKFGILLLCLLLLASCGQSMSTGKLEKAGLLVPDTVNDQVWGTKGYKGMLKIQSHYNVEVYYKEGMNSEMVVERA
VKEFDQKGVNLIFGHGNEYAAYFNNISKKYPDIHFVSFNGDAKNDNTTSLNFEAYAMGFFGGMVAGHMTKTNNIGILAAF
EWQPEVEGFYQGVSEIDEGINVQIQYVGNWDNDNKAIALLDKMIANKTDVVYPAGDGYNVPVIEKLKEEGLYAIGYISDQ
ADLGESVVLTSTVQHVDVLYELVAKKFNEGELESGNLTFDFEDEVISLGKFSPDVDEEFKKELNAAIENYKKTGKLPNE

Nucleotide


Download         Length: 960 bp        

>NTDB_id=491380 IIE26_RS02265 WP_071157530.1 438300..439259(+) (med) [Cytobacillus oceanisediminis strain YPW-V2]
ATGCATAAGACATTAGTGAAATTCGGGATCCTTCTTTTGTGCCTTCTTTTATTGGCCTCCTGCGGACAATCGATGTCTAC
AGGAAAACTTGAAAAAGCTGGATTATTAGTGCCCGATACCGTCAATGATCAGGTATGGGGGACGAAAGGCTATAAAGGCA
TGTTAAAGATTCAATCCCATTATAATGTGGAGGTTTATTATAAAGAGGGCATGAATTCTGAGATGGTTGTTGAAAGAGCT
GTTAAAGAGTTTGATCAAAAAGGTGTAAACCTGATTTTTGGACATGGCAATGAATACGCGGCATACTTTAATAACATTTC
AAAAAAATACCCTGACATTCATTTTGTCAGCTTTAATGGCGATGCCAAAAATGACAACACCACCAGCTTGAATTTTGAAG
CCTATGCAATGGGATTCTTTGGCGGCATGGTTGCTGGCCATATGACGAAAACCAATAACATAGGAATACTCGCAGCTTTT
GAATGGCAGCCGGAGGTAGAAGGTTTTTATCAAGGTGTAAGCGAAATTGATGAAGGTATAAACGTGCAAATCCAATATGT
CGGCAACTGGGACAATGATAATAAAGCCATAGCTCTCTTGGACAAAATGATTGCCAATAAGACAGATGTTGTCTATCCAG
CTGGAGATGGGTATAATGTTCCTGTCATCGAGAAACTAAAAGAGGAAGGGCTCTACGCCATCGGCTATATTTCCGACCAG
GCTGATCTGGGTGAATCAGTCGTCCTGACCAGTACGGTTCAGCATGTCGATGTTTTGTATGAACTAGTGGCAAAAAAATT
CAACGAAGGCGAATTGGAATCAGGAAATCTAACCTTTGATTTCGAGGATGAAGTTATTTCACTTGGGAAATTCAGCCCTG
ACGTCGACGAAGAATTCAAAAAAGAACTAAACGCTGCCATTGAGAATTACAAAAAAACAGGCAAACTGCCCAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

53.035

98.119

0.52