Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J5O00_RS03700 Genome accession   NZ_CP074415
Coordinates   750799..751527 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain 64     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 745799..756527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5O00_RS03675 trpR 746186..746497 (+) 312 WP_005497218.1 trp operon repressor -
  J5O00_RS03680 yjjX 746546..747079 (-) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  J5O00_RS03685 pheA 747104..748282 (-) 1179 WP_005468591.1 prephenate dehydratase -
  J5O00_RS03690 raiA 748526..748852 (-) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  J5O00_RS03695 - 749183..750664 (-) 1482 WP_029806541.1 lytic transglycosylase F -
  J5O00_RS03700 comL 750799..751527 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  J5O00_RS03705 rluD 751664..752641 (+) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J5O00_RS03710 pgeF 752643..753371 (+) 729 WP_029806341.1 peptidoglycan editing factor PgeF -
  J5O00_RS03715 clpC 753519..756092 (+) 2574 WP_029806340.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=491367 J5O00_RS03700 WP_005460312.1 750799..751527(-) (comL) [Vibrio parahaemolyticus strain 64]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=491367 J5O00_RS03700 WP_005460312.1 750799..751527(-) (comL) [Vibrio parahaemolyticus strain 64]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGTAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405