Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   TTJL18_RS10215 Genome accession   NC_017587
Coordinates   1896487..1898520 (+) Length   677 a.a.
NCBI ID   WP_041444469.1    Uniprot ID   -
Organism   Thermus thermophilus JL-18     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1891487..1903520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTJL18_RS10180 (TtJL18_2047) - 1892264..1892728 (+) 465 WP_014630400.1 hypothetical protein -
  TTJL18_RS10185 (TtJL18_2048) pfkA 1892705..1893673 (-) 969 WP_014630401.1 6-phosphofructokinase -
  TTJL18_RS10190 (TtJL18_2049) rsmI 1893670..1894464 (-) 795 WP_014630402.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TTJL18_RS10195 (TtJL18_2050) - 1894466..1894960 (-) 495 WP_014630403.1 hypothetical protein -
  TTJL18_RS10200 (TtJL18_2051) - 1895023..1895550 (-) 528 WP_011173971.1 inorganic diphosphatase -
  TTJL18_RS10205 (TtJL18_2052) - 1895583..1896209 (+) 627 WP_014630404.1 YcxB family protein -
  TTJL18_RS10210 (TtJL18_2053) comEA 1896182..1896490 (+) 309 WP_041444468.1 helix-hairpin-helix domain-containing protein Machinery gene
  TTJL18_RS10215 (TtJL18_2054) comA/comEC 1896487..1898520 (+) 2034 WP_041444469.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TTJL18_RS10220 (TtJL18_2055) - 1898508..1899317 (-) 810 WP_014630406.1 ParB/RepB/Spo0J family partition protein -
  TTJL18_RS10225 (TtJL18_2056) soj 1899301..1900050 (-) 750 WP_011173976.1 chromosome-partitioning ATPase Soj -
  TTJL18_RS10230 (TtJL18_2057) rsmG 1900044..1900793 (-) 750 WP_014630407.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  TTJL18_RS10235 (TtJL18_2058) mnmG 1900793..1902586 (-) 1794 WP_014630408.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 71958.15 Da        Isoelectric Point: 10.2427

>NTDB_id=49136 TTJL18_RS10215 WP_041444469.1 1896487..1898520(+) (comA/comEC) [Thermus thermophilus JL-18]
MRPSWTWGVGLGMGALVAAWGLFAPWAFLGLGLLPFLRLPFALGFGLVLARALLFPLPEPPWGAAVEGVFAVRGGFTRAE
GHLLWVSHYPPLPDGRYRLRGRIAPPQGRTNPGGFDQRAWLLSRGAKGVLRAESAEPLGPLPDWREGFRERLGAGLSLEA
REVVEGLVLGDKGGLETAYPLFQRAGLAHLLALSGLHVGVLVGFAVLGLYPLGRWRYLLALALLPFYLLLAGPSPSLVRA
SLMAGLSLLGLFLGLGGAGVVQALGLALFLQLLLRPEALLGLGFQLSYLAVLGLALVLPALRLPPGPRGYLLGGVAASLA
VQAFLLPLLLHRFGFAPLLAPLANLLALPLVALLVPLGFLKLFLGALPAPLVEPLARGLLLLAGLAAQGPLLRWGEIAPP
GFALYYLGLLPLLFALHRRLPWRRALLLASLPALVGLLAAWPKPLDLWMLDVGQGDALLARMGGGEVLVDGGRAEKGEAV
VRALRALGVEALELLVATHPDADHYGGLFRVIEEVPVGLALLAPGFPEDHPLAQALRARGVPVVRAGAGTRLKVGQGEVR
VLWPEALSGDDNQDGLALLLDFGRGRALLLADLPREVEARLPVGEVEALKVSHHGSQSGTSEVLLERTRPRVALIGVGPN
PFGHPHPEVLERLKRHGAEVRRTDQDGAVRVLFGYAW

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=49136 TTJL18_RS10215 WP_041444469.1 1896487..1898520(+) (comA/comEC) [Thermus thermophilus JL-18]
ATGAGGCCTTCTTGGACCTGGGGAGTGGGGCTTGGGATGGGGGCTTTGGTGGCCGCCTGGGGGCTTTTCGCGCCTTGGGC
CTTCCTTGGGCTCGGCCTCCTTCCCTTCCTCCGCCTTCCCTTCGCCCTGGGCTTCGGCCTCGTCCTGGCCCGGGCCCTCC
TCTTCCCCTTGCCCGAGCCCCCGTGGGGCGCCGCCGTGGAGGGGGTCTTCGCCGTGAGGGGCGGGTTCACACGGGCGGAG
GGCCACCTCCTCTGGGTGAGCCACTATCCCCCTCTACCGGACGGCCGCTACCGCCTCCGGGGGCGCATCGCCCCGCCCCA
AGGCCGGACCAACCCCGGGGGGTTTGACCAACGGGCCTGGCTCCTGAGCCGGGGGGCCAAGGGGGTGCTCCGGGCCGAAA
GCGCCGAGCCATTGGGGCCCCTGCCCGACTGGAGGGAGGGGTTCCGGGAACGCCTAGGGGCGGGCCTGAGCCTCGAGGCC
CGGGAGGTGGTGGAGGGCCTGGTCCTCGGGGACAAGGGGGGCTTAGAGACGGCCTACCCCCTCTTCCAGCGGGCGGGCCT
CGCCCACCTCCTGGCGCTCTCTGGCCTTCACGTGGGGGTGCTCGTGGGCTTCGCCGTCCTCGGCCTCTACCCCCTGGGGC
GGTGGCGCTACCTCCTGGCCCTCGCCCTCCTCCCCTTCTACCTCCTCCTCGCCGGGCCGAGCCCCTCCCTGGTGCGGGCG
AGCCTCATGGCGGGCCTGTCCCTCCTCGGCCTTTTCCTGGGCCTTGGGGGGGCCGGGGTGGTCCAGGCCCTGGGGCTCGC
CCTCTTCCTCCAGCTCCTCCTCCGCCCCGAGGCCCTCCTCGGCCTCGGGTTCCAGCTCTCCTACCTCGCGGTGCTGGGCC
TGGCCCTGGTCCTCCCGGCCCTGAGGCTTCCCCCGGGCCCCAGGGGCTATCTCCTCGGGGGCGTGGCCGCAAGCCTGGCC
GTCCAGGCCTTCCTCCTCCCCCTCCTCCTCCACCGCTTCGGCTTCGCCCCTCTCCTCGCCCCCCTCGCCAACCTCCTCGC
CCTCCCCCTGGTGGCCCTCCTCGTTCCCCTCGGCTTCCTCAAGCTCTTCCTCGGCGCCCTCCCCGCCCCCCTGGTGGAGC
CCCTCGCCCGGGGGCTCCTCCTCCTGGCAGGGCTTGCGGCCCAAGGGCCCCTCCTCCGCTGGGGGGAGATCGCCCCCCCA
GGCTTTGCCCTCTACTACCTGGGCCTTCTCCCCCTCCTTTTCGCCCTCCACCGCAGGCTTCCCTGGCGGCGCGCCCTCCT
CCTCGCCTCCCTGCCCGCCCTGGTGGGCCTCCTCGCCGCCTGGCCCAAGCCGCTGGACCTCTGGATGCTGGACGTGGGCC
AGGGGGACGCCCTCCTCGCCCGCATGGGGGGCGGGGAGGTCCTGGTGGACGGGGGACGGGCGGAGAAGGGGGAGGCGGTG
GTCCGGGCCCTCCGCGCCCTCGGGGTGGAGGCCCTGGAGCTTTTGGTGGCCACCCACCCCGACGCGGACCACTACGGGGG
GCTTTTCCGGGTGATAGAGGAGGTTCCCGTGGGCCTTGCCCTCCTCGCCCCCGGCTTCCCCGAGGACCACCCCCTGGCCC
AGGCCCTAAGGGCGCGGGGCGTCCCCGTGGTGCGGGCCGGGGCGGGAACCCGCCTTAAGGTGGGCCAGGGCGAGGTCCGG
GTGCTCTGGCCCGAGGCCCTCTCCGGGGACGACAACCAAGACGGCCTCGCCCTCCTCCTGGACTTCGGCCGGGGACGGGC
CCTCCTCCTCGCCGACCTGCCCCGGGAGGTGGAGGCCAGGCTTCCCGTGGGGGAGGTGGAGGCGCTCAAGGTGAGCCACC
ACGGCTCCCAAAGCGGCACCTCCGAGGTCCTCCTGGAAAGGACGAGGCCCCGGGTGGCCCTCATCGGGGTGGGGCCCAAC
CCCTTCGGCCACCCCCACCCCGAGGTTCTGGAGCGCCTTAAGCGCCACGGCGCGGAGGTGCGCCGCACCGACCAGGACGG
GGCGGTGCGCGTCCTCTTCGGCTACGCCTGGTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(93-136)

Metallo-beta-lactamase superfamily (Lactamase_B)

(451-635)

Competence protein (Competence)

(167-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

99.261

100

0.993
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.013

90.399

0.371

Multiple sequence alignment