Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KHW16_RS11880 Genome accession   NZ_CP074407
Coordinates   2478937..2479674 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GDAR2-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2473937..2484674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW16_RS11850 (KHW16_11790) yfiL 2474095..2474460 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KHW16_RS11855 (KHW16_11795) aroF 2474670..2475740 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KHW16_RS11860 (KHW16_11800) tyrA 2475751..2476872 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KHW16_RS11865 (KHW16_11805) pheA 2476915..2478075 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KHW16_RS11870 (KHW16_11810) pheL 2478174..2478221 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KHW16_RS11875 (KHW16_11815) raiA 2478325..2478666 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KHW16_RS11880 (KHW16_11820) comL 2478937..2479674 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KHW16_RS11885 (KHW16_11825) rluD 2479809..2480789 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KHW16_RS11890 (KHW16_11830) yfiH 2480786..2481517 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  KHW16_RS11895 (KHW16_11835) clpC 2481647..2484220 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=491317 KHW16_RS11880 WP_000197686.1 2478937..2479674(-) (comL) [Escherichia coli strain GDAR2-2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=491317 KHW16_RS11880 WP_000197686.1 2478937..2479674(-) (comL) [Escherichia coli strain GDAR2-2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376