Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KHA81_RS13555 Genome accession   NZ_CP074391
Coordinates   2775519..2777291 (-) Length   590 a.a.
NCBI ID   WP_003152562.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain L-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2770519..2782291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS13535 sdhA 2770731..2772491 (-) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -
  KHA81_RS13540 sdhC 2772525..2773133 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  KHA81_RS13545 - 2773430..2773876 (+) 447 WP_003152568.1 YslB family protein -
  KHA81_RS13550 - 2773923..2775152 (-) 1230 WP_015387884.1 aspartate kinase -
  KHA81_RS13555 uvrC 2775519..2777291 (-) 1773 WP_003152562.1 excinuclease ABC subunit UvrC Machinery gene
  KHA81_RS13560 trxA 2777434..2777748 (-) 315 WP_003152560.1 thioredoxin -
  KHA81_RS13565 - 2777901..2779391 (-) 1491 WP_015387883.1 alpha-N-arabinofuranosidase -
  KHA81_RS13570 - 2779600..2780577 (-) 978 WP_015387882.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  KHA81_RS13575 - 2780609..2781382 (-) 774 WP_003152551.1 electron transfer flavoprotein subunit beta/FixA family protein -
  KHA81_RS13580 - 2781396..2782175 (-) 780 WP_003152548.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68312.23 Da        Isoelectric Point: 9.6173

>NTDB_id=491230 KHA81_RS13555 WP_003152562.1 2775519..2777291(-) (uvrC) [Bacillus amyloliquefaciens strain L-17]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMIGEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=491230 KHA81_RS13555 WP_003152562.1 2775519..2777291(-) (uvrC) [Bacillus amyloliquefaciens strain L-17]
ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGGTCTTATTTCACCGGTTCTCACGACGCGAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGTCATCCTCGGCTGATTGTCACCCGGAATGTCAAAAAAGACAAGGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTT
TATTATCATCTCGGCCAATGCCTCGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTGTTGAAGACAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTTGAAGCGAAAATGGCAGAAGCGGCCGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAGAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTTATACGCCAAGG
AAAACTGATCGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAGTTTCTGACCTTCATCGGCCAGT
TCTATTCCAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCGGCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGTCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
CCTGCGGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGAAGCACTGA
ATATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATATCGCAAATATAAAATTAAAACCGTAACAGGGCCGGACGATTACGGCTC
AATGAGGGAAGTCGTCAGAAGAAGATACACGAGGGTGCTCCGCGAAAATCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGACTGGCG
AAAGATGATAAACACCGGACATCGAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTTCTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGGCAGATCCGGGGAAAAAGCG
TCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGAAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCCGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrB/uvrC motif (UVR)

(198-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.694

99.661

0.595
  uvrC Streptococcus pneumoniae R6

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae D39

59.354

99.661

0.592